Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_H23
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 68 9e-12
02_04_0585 - 24088344-24089366,24089833-24090075,24090305-240906... 66 4e-11
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 62 4e-10
06_03_0253 + 18753901-18754278,18754873-18754968,18755167-187553... 54 1e-07
06_03_0247 + 18679278-18679319,18679522-18679620,18679897-186801... 53 3e-07
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 30 2.9
06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489 29 3.8
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300 29 5.0
03_02_0730 + 10784784-10785341 28 8.7
02_01_0010 - 72857-72877,73237-73419 28 8.7
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 68.1 bits (159), Expect = 9e-12
Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Frame = +2
Query: 440 SNWTPTGXLKGVILLIFEKALDEPKYSSMYAQLCKRLSEEAPNF---EPPGQPCTFKLLL 610
S T LK VI LIFEKA+ EP + MYAQLC L+E+ P+F EP G+ TFK +L
Sbjct: 233 SGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSDLNEKLPSFPSEEPGGKEITFKRVL 292
Query: 611 LNKCRTEFE 637
LN C+ FE
Sbjct: 293 LNNCQEAFE 301
Score = 32.3 bits (70), Expect = 0.54
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +1
Query: 355 DIIFRKVRGILNKLTPEKF 411
D + + V+GILNKLTPEKF
Sbjct: 205 DRVLKTVKGILNKLTPEKF 223
>02_04_0585 -
24088344-24089366,24089833-24090075,24090305-24090655,
24090736-24090823,24091178-24091275,24091813-24092025,
24092150-24092245,24093124-24093195,24093909-24094067
Length = 780
Score = 66.1 bits (154), Expect = 4e-11
Identities = 35/66 (53%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Frame = +2
Query: 449 TPTGXLKGVILLIFEKALDEPKYSSMYAQLCKRLSEEAPNF---EPPGQPCTFKLLLLNK 619
T LK VI LIFEKA+ EP + MYAQLC L+E+ P+F EP G+ TFK +LLN
Sbjct: 236 TTADILKDVISLIFEKAVLEPTFCPMYAQLCFDLNEKLPSFPSEEPGGKEITFKRVLLNN 295
Query: 620 CRTEFE 637
C+ FE
Sbjct: 296 CQEAFE 301
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 361 IFRKVRGILNKLTPEKF 411
+ + V+GILNKLTPEKF
Sbjct: 207 VLKTVKGILNKLTPEKF 223
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 62.5 bits (145), Expect = 4e-10
Identities = 30/58 (51%), Positives = 36/58 (62%)
Frame = +2
Query: 464 LKGVILLIFEKALDEPKYSSMYAQLCKRLSEEAPNFEPPGQPCTFKLLLLNKCRTEFE 637
L GVI IF+KAL EP + MYA C L+ P+F + TFK LLLNKC+ EFE
Sbjct: 1602 LTGVISQIFDKALMEPTFCEMYANFCFHLAGALPDFSEDNEKITFKRLLLNKCQEEFE 1659
>06_03_0253 +
18753901-18754278,18754873-18754968,18755167-18755376,
18756028-18756093,18756379-18756576,18756616-18756810,
18756968-18757014,18757147-18757234,18757331-18757681,
18758593-18759123
Length = 719
Score = 54.4 bits (125), Expect = 1e-07
Identities = 30/62 (48%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +2
Query: 464 LKGVILLIFEKALDEPKYSSMYAQLCKRLSEEAPNFEPPGQPC---TFKLLLLNKCRTEF 634
LK VI LIFEK + EP + S YAQLC L++ F P C TFK L NKC+ F
Sbjct: 425 LKDVINLIFEKVVAEPAFCSTYAQLCTYLNQNLTPFPPEDCDCEEITFKQALSNKCQEIF 484
Query: 635 EN 640
E+
Sbjct: 485 ES 486
>06_03_0247 +
18679278-18679319,18679522-18679620,18679897-18680100,
18680334-18680431,18680554-18680641,18680728-18681078,
18682093-18682623
Length = 470
Score = 53.2 bits (122), Expect = 3e-07
Identities = 31/66 (46%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +2
Query: 449 TPTGXLKGVILLIFEKALDEPKYSSMYAQLCKRLSEEAPNFEPPGQPC---TFKLLLLNK 619
T T LK VI LI EKA+ EP MYAQ C L+E F P C TFK L +K
Sbjct: 171 TRTDILKDVIDLILEKAVAEPTLCPMYAQFCSYLNENITAFPPKDTHCEQITFKQALSDK 230
Query: 620 CRTEFE 637
C+ FE
Sbjct: 231 CQQAFE 236
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 349 KYDIIFRKVRGILNKLTPEKF 411
KY ++ + V+GILN LTPEKF
Sbjct: 139 KYKVL-KTVKGILNLLTPEKF 158
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = -3
Query: 444 FEPEEIIAQLLKFLRRELVENTTN--LAEYDVVLGISVGHVVMSE**GRDPASPRGDWRP 271
F+P + L + L+ E T + VLG SV + R +P+ W
Sbjct: 415 FKPTAVFVPLSEILKSGNFELVTREIFGPFQEVLGRSVNGTTYAGIRARTTGAPQNHWFG 474
Query: 270 PRGDARGPRL--PRAVR 226
P GD RG + P A++
Sbjct: 475 PAGDPRGAGIGTPEAIK 491
>06_02_0177 + 12644270-12644581,12645717-12646054,12646291-12646489
Length = 282
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 462 SSRASSFSFLRKPWTSLSTRRCTHSSASGSAKRLPTSSRRVSRA 593
SS + + S LR+ ++LS RRC HSS++ + R P R A
Sbjct: 3 SSASRAASLLRRTSSALS-RRCAHSSSAAAPSRPPVPLPRFRAA 45
>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
Length = 623
Score = 29.1 bits (62), Expect = 5.0
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 544 LAELCVHRRVLRLVQGFLKNEKDDALEXPCRSP 446
+AE C H RVL L++ ++ E+D+ ++ + P
Sbjct: 195 IAERCRHLRVLDLIEDYIDEEEDELVDWISKFP 227
>03_02_0730 + 10784784-10785341
Length = 185
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 294 SPRGDWRPPRGDARGPR 244
SP W+P GD RGPR
Sbjct: 41 SPPATWQPGEGDVRGPR 57
>02_01_0010 - 72857-72877,73237-73419
Length = 67
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 525 CTHSSASGSAKRLPTSSRRVSRAHLSFCCLT 617
C +AS + SS V+ AHL+FCCLT
Sbjct: 21 CFAFTASQQQQSDSCSSAGVAVAHLAFCCLT 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,725,711
Number of Sequences: 37544
Number of extensions: 276055
Number of successful extensions: 894
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -