Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H20
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.31 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   3.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = +1

Query: 562 PPPKXPGTQXRXXXXPRXXAPXPPXTPKXXPPPXXPXAXP 681
           P    PG Q      P+      P  P   PPP  P   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 26.6 bits (56), Expect = 0.31
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +2

Query: 629 PPXPPKXSPPLXXPGPXPPXNPXXXXTPP 715
           PP P +  PP   PG  P  NP      P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 629 PPXPPKXSPPLXXPGPXPPXNP 694
           P  P + SPP    GP PP  P
Sbjct: 31  PQAPQRGSPPNPSQGP-PPGGP 51


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 10/33 (30%), Positives = 12/33 (36%)
 Frame = +2

Query: 620 PPXPPXPPKXSPPLXXPGPXPPXNPXXXXTPPG 718
           P  PP PP+    L      P  +      PPG
Sbjct: 104 PTAPPIPPEIQRALEWNAAHPEEDDGGQPRPPG 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.146    0.496 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,113
Number of Sequences: 438
Number of extensions: 4338
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)