Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H19
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    33   0.28 
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   6.1  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   6.1  

>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +2

Query: 737 PPPXXPLKKX*XLIXPXGXNPGKTLKXXXXXXPXXNPPXXPPPXXPPXPVP 889
           PPP  P+K     + P    P  T        P  +PP  PPP  PP P P
Sbjct: 324 PPPPPPMK-----LDP-SPQPAATPVEITEIPPIISPPAPPPPPPPPPPPP 368


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 833 PXXNPPXXPPPXXPPXPVP 889
           P   PP  PPP  PP P P
Sbjct: 298 PAAAPPPPPPPPPPPAPAP 316


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 833 PXXNPPXXPPPXXPPXPVP 889
           P   PP  PPP  PP P P
Sbjct: 298 PAAAPPPPPPPPPPPAPAP 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,663,603
Number of Sequences: 27780
Number of extensions: 180247
Number of successful extensions: 825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)