Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H18
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    30   0.50 
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   2.0  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.7  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    27   3.5  
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces...    27   4.6  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   6.1  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   6.1  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +1

Query: 463 MDLPQCVCYVCAALLQKYSRFKTKCLLGQSVLYQILNSGKKVTVTSVQELDRSNLKIPFA 642
           MDL +   Y  AA ++ Y   K   L    V   +LN   K+     ++LD+ N ++   
Sbjct: 255 MDLSEMCGYSVAAQVKLYHSIKP--LFANKVTILVLN---KIDAMRPEDLDQKNQELLQT 309

Query: 643 VYTETDVKTIHTVC 684
           +  + +VK + T C
Sbjct: 310 IIDDGNVKVVQTSC 323


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +1

Query: 193 NAHKPLTRTVLLS*KLYYFISL-SRYAAN 276
           NAH+PL + VLLS  +Y ++ L SR ++N
Sbjct: 837 NAHRPLFQQVLLSNFMYSYLDLISRISSN 865


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 385 VKMYSLQSNPLQTYFEETLGVNPVCS 462
           +K+Y  QSN ++ Y+ E+  +N VCS
Sbjct: 25  LKVYWAQSNLVELYYGESFYINIVCS 50


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 676 TVCDDPKLPIKEEIDIAIDSKTSLENDLQANEIFRKD 786
           +V ++PKL I E ++   DSK SL+N      I   D
Sbjct: 13  SVEENPKLNIPEIVESVSDSKPSLKNQFSTTVIDSSD 49


>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 673 HTVC-DDPKLPIKEEIDIAIDSKTSLENDLQANEIFRKDGEYV 798
           +T C +DP  P KE+I  A D KTS++      E F K  E V
Sbjct: 119 YTACHEDPVFPKKEKIYKA-DYKTSIQRSRVLAEFFAKVPEKV 160


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 659 SVSVYTANGIFKLLRSSSWTDVTVTFLPEFSIW*STDC 546
           S+S   +NG+     S    ++ V    EFSIW +T+C
Sbjct: 304 SLSFAASNGVDGASSSQVLENILVASDKEFSIWTATEC 341


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +1

Query: 139  NIVYN--YYLCFILSLKYYRNAHKPLTRT 219
            N+V+   ++LC+   +K+Y++ H P  +T
Sbjct: 1308 NLVFGTLFFLCWFYPIKFYKHIHHPGDKT 1336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,157
Number of Sequences: 5004
Number of extensions: 63699
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)