Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_H16
(875 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical pr... 114 7e-26
Z83122-7|CAF31483.1| 618|Caenorhabditis elegans Hypothetical pr... 114 7e-26
Z83122-5|CAB05600.1| 654|Caenorhabditis elegans Hypothetical pr... 114 7e-26
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 109 3e-24
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 109 3e-24
Z83122-6|CAF31482.1| 587|Caenorhabditis elegans Hypothetical pr... 104 7e-23
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 52 5e-07
AF125442-11|AAD12791.1| 624|Caenorhabditis elegans Hypothetical... 38 0.007
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 31 0.82
Z68014-2|CAA92024.1| 565|Caenorhabditis elegans Hypothetical pr... 30 2.5
U41532-5|AAF99906.2| 111|Caenorhabditis elegans Hypothetical pr... 29 5.8
AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical... 29 5.8
U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 rela... 28 7.6
AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell fac... 28 7.6
>Z83122-8|CAF31484.1| 582|Caenorhabditis elegans Hypothetical
protein R11A5.4b protein.
Length = 582
Score = 114 bits (275), Expect = 7e-26
Identities = 54/134 (40%), Positives = 78/134 (58%)
Frame = +1
Query: 385 LTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDP 564
L KV+ F+ A L +P+ + +CDGS+ EA +L Y+N ++ RTDP
Sbjct: 53 LPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDP 112
Query: 565 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRXLVCMRGRTMYV 744
DVARVES+T++ + + D V + G + +G++++P D + R CM GR MYV
Sbjct: 113 KDVARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCMAGRIMYV 172
Query: 745 IPFSMGPXGSPLSK 786
IPFSMGP G PLSK
Sbjct: 173 IPFSMGPVGGPLSK 186
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2
Query: 785 KIGVEITDSPYVVFSMRVM 841
KIG+++TDS YVV SMR+M
Sbjct: 186 KIGIQLTDSNYVVLSMRIM 204
>Z83122-7|CAF31483.1| 618|Caenorhabditis elegans Hypothetical
protein R11A5.4d protein.
Length = 618
Score = 114 bits (275), Expect = 7e-26
Identities = 54/134 (40%), Positives = 78/134 (58%)
Frame = +1
Query: 385 LTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDP 564
L KV+ F+ A L +P+ + +CDGS+ EA +L Y+N ++ RTDP
Sbjct: 17 LPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDP 76
Query: 565 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRXLVCMRGRTMYV 744
DVARVES+T++ + + D V + G + +G++++P D + R CM GR MYV
Sbjct: 77 KDVARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCMAGRIMYV 136
Query: 745 IPFSMGPXGSPLSK 786
IPFSMGP G PLSK
Sbjct: 137 IPFSMGPVGGPLSK 150
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2
Query: 785 KIGVEITDSPYVVFSMRVM 841
KIG+++TDS YVV SMR+M
Sbjct: 150 KIGIQLTDSNYVVLSMRIM 168
>Z83122-5|CAB05600.1| 654|Caenorhabditis elegans Hypothetical
protein R11A5.4a protein.
Length = 654
Score = 114 bits (275), Expect = 7e-26
Identities = 54/134 (40%), Positives = 78/134 (58%)
Frame = +1
Query: 385 LTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDP 564
L KV+ F+ A L +P+ + +CDGS+ EA +L Y+N ++ RTDP
Sbjct: 53 LPAKVQRFIAEKAELMRPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDP 112
Query: 565 ADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRXLVCMRGRTMYV 744
DVARVES+T++ + + D V + G + +G++++P D + R CM GR MYV
Sbjct: 113 KDVARVESKTWMVTKNKYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCMAGRIMYV 172
Query: 745 IPFSMGPXGSPLSK 786
IPFSMGP G PLSK
Sbjct: 173 IPFSMGPVGGPLSK 186
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2
Query: 785 KIGVEITDSPYVVFSMRVM 841
KIG+++TDS YVV SMR+M
Sbjct: 186 KIGIQLTDSNYVVLSMRIM 204
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 109 bits (262), Expect = 3e-24
Identities = 55/137 (40%), Positives = 77/137 (56%)
Frame = +1
Query: 379 ATLTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLART 558
A+L+PKV+ FV A L P +++CDGS+ E L Y+N +L RT
Sbjct: 38 ASLSPKVQRFVAEKAELMNPAGIYICDGSQKEYDDIVDKLVERGVLTPLKAYENNYLCRT 97
Query: 559 DPADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRXLVCMRGRTM 738
DP DVARVES+T++ + + D V G + +G ++S + + R CM GR M
Sbjct: 98 DPRDVARVESKTWMVTKDKYDSVCHTPDGVRPIMGQWMSEEQFGVELDSRFPGCMAGRPM 157
Query: 739 YVIPFSMGPXGSPLSKN 789
YV+P+SMGP G PLSKN
Sbjct: 158 YVVPYSMGPIGGPLSKN 174
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 785 KIGVEITDSPYVVFSMRVM 841
K G+E+TDSPYVV MR M
Sbjct: 173 KNGIELTDSPYVVLCMRTM 191
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 109 bits (262), Expect = 3e-24
Identities = 55/137 (40%), Positives = 77/137 (56%)
Frame = +1
Query: 379 ATLTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLART 558
A+L+PKV+ FV A L P +++CDGS+ E L Y+N +L RT
Sbjct: 38 ASLSPKVQRFVAEKAELMNPAGIYICDGSQKEYDDIVDKLVERGVLTPLKAYENNYLCRT 97
Query: 559 DPADVARVESRTFICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRXLVCMRGRTM 738
DP DVARVES+T++ + + D V G + +G ++S + + R CM GR M
Sbjct: 98 DPRDVARVESKTWMVTKDKYDSVCHTPDGVRPIMGQWMSEEQFGVELDSRFPGCMAGRPM 157
Query: 739 YVIPFSMGPXGSPLSKN 789
YV+P+SMGP G PLSKN
Sbjct: 158 YVVPYSMGPIGGPLSKN 174
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 785 KIGVEITDSPYVVFSMRVM 841
K G+E+TDSPYVV MR M
Sbjct: 173 KNGIELTDSPYVVLCMRTM 191
>Z83122-6|CAF31482.1| 587|Caenorhabditis elegans Hypothetical
protein R11A5.4c protein.
Length = 587
Score = 104 bits (250), Expect = 7e-23
Identities = 48/118 (40%), Positives = 70/118 (59%)
Frame = +1
Query: 433 QPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDPADVARVESRTFICSDR 612
+P+ + +CDGS+ EA +L Y+N ++ RTDP DVARVES+T++ +
Sbjct: 2 RPRGIFICDGSQHEADELIDKLIERGMLSKLEAYENNYICRTDPKDVARVESKTWMVTKN 61
Query: 613 ESDVVPSARAGQKSALGNYISPPDYEKAVSDRXLVCMRGRTMYVIPFSMGPXGSPLSK 786
+ D V + G + +G++++P D + R CM GR MYVIPFSMGP G PLSK
Sbjct: 62 KYDTVTHTKEGVEPIMGHWLAPEDLATELDSRFPGCMAGRIMYVIPFSMGPVGGPLSK 119
Score = 33.1 bits (72), Expect = 0.27
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +2
Query: 785 KIGVEITDSPYVVFSMRVM 841
KIG+++TDS YVV SMR+M
Sbjct: 119 KIGIQLTDSNYVVLSMRIM 137
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 52.0 bits (119), Expect = 5e-07
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +1
Query: 643 GQKSALGNYISPPDYEKAVSDRXLVCMRGRTMYVIPFSMGPXGSPLSKN 789
G + +G ++S + + R CM GR MYV+P+SMGP G PLSKN
Sbjct: 16 GVRPIMGQWMSEEQFGVELDSRFPGCMAGRPMYVVPYSMGPIGGPLSKN 64
Score = 31.9 bits (69), Expect = 0.62
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +2
Query: 785 KIGVEITDSPYVVFSMRVM 841
K G+E+TDSPYVV MR M
Sbjct: 63 KNGIELTDSPYVVLCMRTM 81
>AF125442-11|AAD12791.1| 624|Caenorhabditis elegans Hypothetical
protein H04M03.1 protein.
Length = 624
Score = 38.3 bits (85), Expect = 0.007
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 13/146 (8%)
Frame = +1
Query: 376 LATLTPKVRAFVERSAALCQPKHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLAR 555
L L+P+V F+ L P V +C+GS EA+ + D L
Sbjct: 50 LTWLSPEVLTFLNDCVQLMTPCAVRICNGSVFEAQELRDAIANEFGNEEQQMLDRFHLKM 109
Query: 556 TDPA-DVARVESRTFICSDRESDVVPSARAGQKSALGN------------YISPPDYEKA 696
D D V ++ + +D + +A A + S+ G+ Y+S ++
Sbjct: 110 ADIGYDDVSVVTKDRLDADPGISL-SNASASRTSSSGSGEGIENVRLSSHYMSQKMFDFN 168
Query: 697 VSDRXLVCMRGRTMYVIPFSMGPXGS 774
+ M GRTMYV+PFSMG GS
Sbjct: 169 KTKLFDCSMSGRTMYVVPFSMGTIGS 194
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 31.5 bits (68), Expect = 0.82
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +2
Query: 533 TITVGWPGQTRQTLPGLNPARSYAPIGRATWSPRLAPARSPPWGTTSPPRITRRQCP 703
T+T P T PG P ++ P +T P PW T+PP T R P
Sbjct: 134 TVTPPSPSVTPGGRPGSTPPATFPPGSISTVRYTPGPTPPGPWTYTAPPYYTYRTVP 190
>Z68014-2|CAA92024.1| 565|Caenorhabditis elegans Hypothetical
protein W04G3.2 protein.
Length = 565
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -1
Query: 800 FPHQFFERGDPXGPIENG--ITYIVRPLMQT 714
FP + FE G P GP++NG T++V L +T
Sbjct: 88 FPEKTFEIGAPQGPVQNGNQPTHVVSSLEKT 118
>U41532-5|AAF99906.2| 111|Caenorhabditis elegans Hypothetical
protein F11D5.6 protein.
Length = 111
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 611 GRATWSPRLAPARSPPWGTTSPPRITRRQCPTD 709
GR + +P PA PP S P +RQC D
Sbjct: 73 GRLSKTPSSTPAPPPPQPVVSTPAKAKRQCKFD 105
>AC024696-11|AAK84510.1| 401|Caenorhabditis elegans Hypothetical
protein F07B7.14 protein.
Length = 401
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = +1
Query: 679 PDYEKAVSDRXLVCMRGRTMYVIPFSMGPXG---SPLSKNW 792
P EK +S R C R RT +P S+GP G SP W
Sbjct: 94 PPKEK-ISTRLASCRRPRTSSSLPLSLGPSGDIKSPPRPRW 133
>U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 related
protein 1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +2
Query: 530 NTITVGWP---GQTRQTLP-GLNPAR--SYAPIGRATWSPRLAPARSPP 658
N++ + WP G + L G A+ S +PI RAT SPR P+ PP
Sbjct: 393 NSLEISWPIVQGASGYFLQIGFGDAKEQSVSPIKRATTSPRKQPSIVPP 441
>AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell factor
1 protein.
Length = 782
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Frame = +2
Query: 530 NTITVGWP---GQTRQTLP-GLNPAR--SYAPIGRATWSPRLAPARSPP 658
N++ + WP G + L G A+ S +PI RAT SPR P+ PP
Sbjct: 393 NSLEISWPIVQGASGYFLQIGFGDAKEQSVSPIKRATTSPRKQPSIVPP 441
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,214,969
Number of Sequences: 27780
Number of extensions: 375323
Number of successful extensions: 1195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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