Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H14
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    32   0.12 
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    30   0.48 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    28   1.5  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   4.5  

>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
 Frame = +1

Query: 265 SFSENEEYIKSCPSVDQENMTECS------SLLYPCITCNRSIDCRYG-GFYNYTCTVKP 423
           SF ++ ++++ CP+ D E   EC       S + P +TCN      +G G  N+  T+ P
Sbjct: 206 SFVDDNDHLRWCPAPDCEFAIECHVTQASLSSVVPTVTCNCGKQFCFGCGHDNHQPTICP 265

Query: 424 KVVCQGLKTFNKSSMCRFCYQTDKWEHRC----EQKANCNSL 537
            V     K  + S    + +   K   +C    E+   CN +
Sbjct: 266 LVKIWLQKCQDDSETANWIHANTKECPKCSTTIEKNGGCNHM 307


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 300 TTFYVFFILTKTYTFVI*ITFYFILFTVKIHVIISHIGDMYC 175
           T FY  F+L      +  I++YF+L  V +++    +G +YC
Sbjct: 154 TGFYSLFLLLSMSDSMSSISYYFLLSLVLLYIASISLGRIYC 195


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -3

Query: 773  VHTPSHQN*KVYQCLLANDQDKSGQLQNLLKLMPEQVLYPNES 645
            ++TPSH    +Y  +  ND+D  G + ++L+   E VL P+ S
Sbjct: 913  IYTPSHAQATLYGNMDNNDRDNEG-IHDILQSDMEPVLPPHNS 954


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 129 KHSRLFYFDFISNNEHNTCHRY 194
           KH ++ Y DF+  ++ +TC RY
Sbjct: 26  KHDKVDYKDFVRRDDGDTCLRY 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,927
Number of Sequences: 5004
Number of extensions: 67957
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)