Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_H14
(853 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 31 1.5
05_04_0046 - 17482792-17483124 30 2.7
04_04_1479 - 33888521-33888853 30 2.7
02_01_0223 + 1453478-1453750,1455788-1456018,1456066-1456200,145... 29 3.6
01_01_0257 + 2097785-2097797,2098080-2098189,2098299-2098392,209... 29 3.6
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70... 29 3.6
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859... 29 4.7
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 29 6.2
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +1
Query: 64 LYSXGRRNALISSMHRTLPLRISIRDCFILILLVIMNTIHVTDMANNNMDFHSKENKIKG 243
LY G A++ M++ LRI + D +++ + N+ + ++ +N F + +KG
Sbjct: 2808 LYIEGYLQAMLDVMYKQEYLRIRVIDDQVILKNLPPNSALINEIVDNVKSFLVSKGLLKG 2867
Query: 244 DSND-KGVSFSENEEYIKSCPSV 309
DS+ + + NE + P+V
Sbjct: 2868 DSSTIRPLRHLRNEPEWRIAPTV 2890
>05_04_0046 - 17482792-17483124
Length = 110
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 331 CSSLLYPCITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRC 510
C S + PC +C YG F C V+C G+ + + C+ C Q +K C
Sbjct: 33 CDSYVRPCTLVRVCDECNYGSFQG-RC-----VICGGV-GISDAYYCKECTQQEKDRDGC 85
Query: 511 EQKANCNS 534
+ N S
Sbjct: 86 PKIVNLGS 93
>04_04_1479 - 33888521-33888853
Length = 110
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 331 CSSLLYPCITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRC 510
C S + PC +C YG F C V+C G+ + + C+ C Q +K C
Sbjct: 33 CDSYVRPCTLVRVCDECNYGSFQG-RC-----VICGGV-GISDAYYCKECTQQEKDRDGC 85
Query: 511 EQKANCNS 534
+ N S
Sbjct: 86 PKIVNLGS 93
>02_01_0223 +
1453478-1453750,1455788-1456018,1456066-1456200,
1457918-1457971,1458417-1458482,1458593-1458679,
1459338-1459394,1459470-1459500,1459577-1459634,
1459710-1459761,1459881-1459917,1460008-1460210,
1460556-1460633,1460683-1460853,1461126-1461239
Length = 548
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 196 ANNNMDFHSKENKIKGD-SNDKGVSFSENEEYIKSCPS 306
AN+ D HSKEN +K D S+ G+S + + + P+
Sbjct: 344 ANSQNDSHSKENDVKEDGSSQNGISHTALNQNMSMAPT 381
>01_01_0257 +
2097785-2097797,2098080-2098189,2098299-2098392,
2098786-2098974,2099061-2099120,2099231-2099391
Length = 208
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 575 VSDDVICLGKRRFLKKVRCSWTSG-TRW 655
V+ DVIC G++ FLK R S+ SG T W
Sbjct: 46 VTGDVICHGEKSFLKDGRKSFPSGHTSW 73
>01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-700469,
700547-701373,701487-701559,701993-702078,702153-702227,
702308-702548,702905-703239,703328-703414,703497-703640,
703714-704670
Length = 1167
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 190 DMANNNMDFHSKENKIKGDSNDKGVSFSENE-EYIKSC 300
++ N +D K NK+ GD N K VSF E + SC
Sbjct: 1062 EIKNFALDLGKKLNKVLGDCNYKTVSFDEKSLSFFPSC 1099
>11_06_0561 -
24984960-24985205,24985283-24985354,24985906-24985977,
24986612-24986782,24987464-24987653,24987733-24987976,
24988162-24988474,24988687-24989517,24989628-24989672,
24989677-24989790,24989877-24990371,24990627-24990824,
24990902-24991357
Length = 1148
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/73 (27%), Positives = 29/73 (39%)
Frame = +1
Query: 277 NEEYIKSCPSVDQENMTECSSLLYPCITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFN 456
N E IK+C + + N+ + LY CI RS G K K G +
Sbjct: 458 NSESIKNCNKLHEMNLENRAQALYCCIFLWRSFVKELGFVLGLKPYCKEKCDHDGCTICS 517
Query: 457 KSSMCRFCYQTDK 495
KS + F + + K
Sbjct: 518 KSKLAVFSFSSFK 530
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = -1
Query: 484 DSKIYTLSFC*KFLTLDKLLLVSLYMYNYRNLHICNLYSGYMLYKGTVKKNIQSYSLDQL 305
+ K+ + F +F LDKLL V RN H N + G ++ Y++D++
Sbjct: 115 NQKLAPVDFKCEFGLLDKLLKVDA-----RNFHGWNYRRFLARFMGVPEEEELKYTMDKI 169
Query: 304 TDNF 293
+DNF
Sbjct: 170 SDNF 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,597,196
Number of Sequences: 37544
Number of extensions: 375762
Number of successful extensions: 802
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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