Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_H14
(853 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical ... 78 9e-15
Z66522-1|CAA91406.3| 425|Caenorhabditis elegans Hypothetical pr... 33 0.20
L14745-13|AAR25658.1| 210|Caenorhabditis elegans Hypothetical p... 33 0.20
U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 31 0.79
AL161712-16|CAC35892.1| 329|Caenorhabditis elegans Hypothetical... 31 0.79
Z81463-7|CAE17701.1| 172|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z70287-4|CAA94297.1| 299|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z81563-2|CAB04564.1| 181|Caenorhabditis elegans Hypothetical pr... 28 7.3
U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger pr... 28 7.3
Z92804-1|CAB07252.1| 338|Caenorhabditis elegans Hypothetical pr... 28 9.7
U53154-4|AAC25851.1| 346|Caenorhabditis elegans Hypothetical pr... 28 9.7
U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical pr... 28 9.7
U23526-1|AAK95866.1| 252|Caenorhabditis elegans Claudin-like in... 28 9.7
AF252604-1|AAF67350.1| 252|Caenorhabditis elegans Gas3/PMP22-li... 28 9.7
>AF003740-5|AAL08031.1| 195|Caenorhabditis elegans Hypothetical
protein C41D11.9 protein.
Length = 195
Score = 77.8 bits (183), Expect = 9e-15
Identities = 33/74 (44%), Positives = 42/74 (56%)
Frame = +2
Query: 542 SPLKYYLTNCTVSDDVICLGKRRFLKKVRCSWTSGTRWXXXXXXXXXXXXXXXDRFYLGH 721
S K +T C+ VIC+G+R F K++ C+W+SG W DRFYLG
Sbjct: 97 SSTKLLVTKCSAHSSVICMGQRNFYKRIPCNWSSGYSWTKTMILSVVLGGFGADRFYLGL 156
Query: 722 WQEGIGKLFSFGGL 763
W+ IGKLFSFGGL
Sbjct: 157 WKSAIGKLFSFGGL 170
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 355 ITCNRSIDCRYGGFYNYTCTVKPKVVCQGLKTFNKSSMCRFCYQTDKWEHRCEQKANCNS 534
+TC DCR G CT + K + N ++CRFC+Q ++ CE NC++
Sbjct: 38 LTCTFPGDCRIGDTVKVNCTSR-KGCPNPVSRNNVEAVCRFCWQLLPGDYDCEPATNCST 96
>Z66522-1|CAA91406.3| 425|Caenorhabditis elegans Hypothetical
protein F14E5.3 protein.
Length = 425
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 256 KGVSFSENEEYIKSCPSVDQENMTECSSLLYPCITCNRSI 375
+G +F+ N IK CP ++ N E ++LY C+ N SI
Sbjct: 195 RGCNFTRNSR-IKQCPKTEKVNRDEMYAVLYECMGGNHSI 233
>L14745-13|AAR25658.1| 210|Caenorhabditis elegans Hypothetical
protein C02F5.13 protein.
Length = 210
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/72 (29%), Positives = 28/72 (38%)
Frame = +2
Query: 569 CTVSDDVICLGKRRFLKKVRCSWTSGTRWXXXXXXXXXXXXXXXDRFYLGHWQEGIGKLF 748
C V + C G R F K C +G + DRF LG+ +GKL
Sbjct: 118 CRVLPCIECHGPRTFTKSTPCIIYNGHYFLTTLLYSIFLGVVAVDRFCLGYSAMAVGKLM 177
Query: 749 SFGGLECGPXWM 784
+ GG G W+
Sbjct: 178 TLGGF--GIWWI 187
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 394 FYNYTCTVKPKVVCQGLKTFNKSSMC 471
F N C V P + C G +TF KS+ C
Sbjct: 113 FTNVKCRVLPCIECHGPRTFTKSTPC 138
>U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical
protein C05D11.1 protein.
Length = 995
Score = 31.5 bits (68), Expect = 0.79
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +1
Query: 85 NALISSMHRTLPLRISIRDCFILILLVIMNTIHVTDMANNNMDFHSKENKIKGDSNDKGV 264
NA + H L D F+ +L V +N + +T M + F ++ + I G+ ND GV
Sbjct: 92 NAWTDTDHTAYTLSTVGSDGFLKVLPVYINHL-LTPMLTASQ-FATEVHHITGEGNDAGV 149
Query: 265 SFSENEEYIKSCPSVDQENMTECSSLLYP 351
+SE +++ S+ E ++YP
Sbjct: 150 VYSEMQDHESEMESIMDRKTKE---VIYP 175
>AL161712-16|CAC35892.1| 329|Caenorhabditis elegans Hypothetical
protein Y66D12A.21 protein.
Length = 329
Score = 31.5 bits (68), Expect = 0.79
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +2
Query: 569 CTVSDDVICLGKRRF-----LKKVRCSWTSGTRWXXXXXXXXXXXXXXXDRFYLGHWQEG 733
C ++ + C+GK +F C + + + DR YLG++ G
Sbjct: 57 CETAEHIKCVGKDQFGIFNRTVPSACHYGAHVSYTTTVLLSIFLGFFGIDRIYLGYYALG 116
Query: 734 IGKLFSFGGL 763
+ K+FS GGL
Sbjct: 117 LIKMFSLGGL 126
>Z81463-7|CAE17701.1| 172|Caenorhabditis elegans Hypothetical
protein C06B8.11 protein.
Length = 172
Score = 29.9 bits (64), Expect = 2.4
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Frame = +1
Query: 211 DFHSKENK--IKGDSNDKGV-SFSENEEYIKSCPSVDQENMTECSSLLYPCITCNRSIDC 381
DF N + G +GV ++ + +++ P+ D C S Y C++ I+
Sbjct: 60 DFRCAANSKSLGGHCQIEGVQTYGDKYRFLRGIPAFDCGKNGVCLSSPYYNFCCDKRIED 119
Query: 382 RYGGFYNYTCTVKPKVVCQGLKTF---NKSSMCRFC 480
+Y ++ C KVV G + KS FC
Sbjct: 120 KYNADFDPKCARGTKVVKDGESGYILRGKSCKSNFC 155
>Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical
protein F48F7.5 protein.
Length = 293
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Frame = +1
Query: 187 TDMANNNMDFHSKENKIKGDSNDK-GVSFSENEE----YIKSCPSVDQENMTE 330
TD+ +++D + +E ++ +SND F E +E Y++ P+ D+E + E
Sbjct: 231 TDLEGSDVDENREEKELIDESNDSDDTEFEEEDEYETDYVEDEPTFDEETIPE 283
>Z70287-4|CAA94297.1| 299|Caenorhabditis elegans Hypothetical
protein R09E10.6 protein.
Length = 299
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 152 KIKQSRMLIRKGRVLCMLEIKAFLLP 75
K+ +S +L R+GRVLCM+ K F P
Sbjct: 30 KVHESDVL-RRGRVLCMIRSKNFFFP 54
>Z81563-2|CAB04564.1| 181|Caenorhabditis elegans Hypothetical
protein K04H8.2 protein.
Length = 181
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 319 NMTECSSLLYPCIT-CNRSIDCRYGGFYNYTC 411
N TE + C+T C+ +DC GF N TC
Sbjct: 60 NFTEKTVNWSSCVTNCHNKLDCIVAGFENGTC 91
>U97193-14|AAB52442.2| 381|Caenorhabditis elegans Ring finger
protein protein 1 protein.
Length = 381
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +1
Query: 214 FHSKENKIKGDSNDKGVSFSENEEYIKSCPSVDQENMTECSSLLYPCI 357
F + + I S G SF N E CP D +N++ECS YP +
Sbjct: 262 FGNDNDSISQVSTTSG-SFG-NHENDHFCPFSDDDNISECSDDYYPTL 307
>Z92804-1|CAB07252.1| 338|Caenorhabditis elegans Hypothetical
protein K05D4.2 protein.
Length = 338
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 121 LRISIRDCFILILLVIMN 174
LR S+R+CF+ ILLV+ N
Sbjct: 127 LRFSLRNCFLWILLVLSN 144
>U53154-4|AAC25851.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.9 protein.
Length = 346
Score = 27.9 bits (59), Expect = 9.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 394 FYNYTCTVKPKVVCQGLKTFNKSSMCRFC 480
F Y + KP++ C + F+ S CR+C
Sbjct: 27 FRRYVNSKKPQIECTCSQKFDSSGPCRYC 55
>U41530-1|AAA83273.3| 636|Caenorhabditis elegans Hypothetical
protein SSSD1.1 protein.
Length = 636
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 262 VSFSENEEYIKSCPSVDQENMTECSSLLYPCITCN 366
+++S NE+ I + P + N+ E LY C+ N
Sbjct: 73 ITWSRNEQIISTSPVLTLSNLEEGDKGLYTCLAVN 107
>U23526-1|AAK95866.1| 252|Caenorhabditis elegans Claudin-like in
caenorhabditisprotein 2 protein.
Length = 252
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 94 ISSMHRTLPLRISIRDCFILILLVIMNTIHVTDMANNNMDFHSKEN 231
I HR I++ F+ ++ +I++ +HV A N+ S++N
Sbjct: 162 IYEKHRGYSWYIALTGAFVYLVAIILSVVHVLLQARNSNTTMSRQN 207
>AF252604-1|AAF67350.1| 252|Caenorhabditis elegans Gas3/PMP22-like
protein protein.
Length = 252
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +1
Query: 94 ISSMHRTLPLRISIRDCFILILLVIMNTIHVTDMANNNMDFHSKEN 231
I HR I++ F+ ++ +I++ +HV A N+ S++N
Sbjct: 162 IYEKHRGYSWYIALTGAFVYLVAIILSVVHVLLQARNSNTTMSRQN 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,955,639
Number of Sequences: 27780
Number of extensions: 377239
Number of successful extensions: 932
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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