Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H14
         (853 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    26   0.38 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   8.2  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 43  ILIFVRYLYSXGRRNALISSMHRTLPLRIS-IRDCFILILLVIMNTIHVTDMANNNMDFH 219
           +L F  Y Y    R   + S+   +P  +S IR   +++L      IH+  +  NN++  
Sbjct: 24  VLDFDYYFYDYSNRTQALESIIANIPTWLSFIRIVLVILLRAGYVLIHIGSVPVNNINLI 83

Query: 220 SKENKI 237
             +N I
Sbjct: 84  LLQNII 89


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 785 ASXRVHTPSHQN*KVYQCLLANDQDKSGQLQNLLKL 678
           A  R+ +   ++  +YQC + NDQ+ S Q    LKL
Sbjct: 353 AVLRIESVKKEDKGMYQCFVRNDQE-SAQATAELKL 387


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 103 CWKSKHFF 80
           CW S+HFF
Sbjct: 332 CWNSEHFF 339


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 788 NASXRVHTPSHQN*KVYQCLLAND 717
           N   ++H  +H   KVY+C L ++
Sbjct: 244 NHVLKLHQVAHYGEKVYKCTLCHE 267


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 623 VRCSWTSGTRW 655
           VRCS  SG RW
Sbjct: 21  VRCSAASGLRW 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,418
Number of Sequences: 438
Number of extensions: 4738
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)