Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H08
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.6  
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   7.9  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = +2

Query: 299 IKCVSSQIAYLESELAKSSFNWNELKKNILFERGNINEKNFEGV-LLKFMVQRKKF---- 463
           +  +SS  + L +EL     ++    +  L+   ++NE   E + L++    R +F    
Sbjct: 37  VSSISSDASQLYAELIPLLLDFLRNTEVNLYRNSSVNELKIEALTLIQSCAHRDEFKQYA 96

Query: 464 -DAANSFVCYINKKNEELSLXCNK 532
                SF+  I   NEE+++ C K
Sbjct: 97  QSCVLSFISLIKADNEEVAVFCLK 120


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -3

Query: 510 SSFFLFI*QTKEFAASNFFLCTINFRRTPSKFFSLMFPLSKSMFFFNSFQLNELFA 343
           +SFF F+ +    AAS  F+ TI   R  ++F S        +FF +   L  LFA
Sbjct: 48  ASFFAFVSEKSLEAASVKFVATIIAERMGAQFSSFY----DKIFFVDMLGLGSLFA 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,367
Number of Sequences: 5004
Number of extensions: 55796
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)