Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H07
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    32   0.62 
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      32   0.62 
AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog ...    32   0.62 
Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    29   5.8  

>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
           protein F09E8.3 protein.
          Length = 1369

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 180 EKPREELPTRALRPRSTLTRKTTNALSSQSVGS 278
           EK R E  T A + RST+T ++ + LSS+S+ S
Sbjct: 889 EKERSEASTPASKSRSTITARSNSVLSSRSMAS 921


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 180 EKPREELPTRALRPRSTLTRKTTNALSSQSVGS 278
           EK R E  T A + RST+T ++ + LSS+S+ S
Sbjct: 889 EKERSEASTPASKSRSTITARSNSVLSSRSMAS 921


>AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog
           protein.
          Length = 933

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +3

Query: 180 EKPREELPTRALRPRSTLTRKTTNALSSQSVGS 278
           EK R E  T A + RST+T ++ + LSS+S+ S
Sbjct: 889 EKERSEASTPASKSRSTITARSNSVLSSRSMAS 921


>Z92773-4|CAB07130.2|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 129 EESDGLPPASSSSIAAQEKPREELP 203
           EE  G+ PA    +  QEKPR++ P
Sbjct: 237 EEDQGVRPAQKRQVKQQEKPRKQKP 261


>Z81114-8|CAB97236.1|  584|Caenorhabditis elegans Hypothetical
           protein W08E3.2 protein.
          Length = 584

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 129 EESDGLPPASSSSIAAQEKPREELP 203
           EE  G+ PA    +  QEKPR++ P
Sbjct: 237 EEDQGVRPAQKRQVKQQEKPRKQKP 261


>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +3

Query: 126 LEESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKT 302
           L +   +PP +S+S    +KP       +  P ST T  TT    + S  +  S    T
Sbjct: 577 LRKVSTVPPTTSTSSTTTQKPSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTT 635


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = +3

Query: 126 LEESDGLPPASSSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKT 302
           L +   +PP +S+S    +KP       +  P ST T  TT    + S  +  S    T
Sbjct: 577 LRKVSTVPPTTSTSSTTTQKPSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTT 635


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,816,539
Number of Sequences: 27780
Number of extensions: 110942
Number of successful extensions: 400
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)