Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H06
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    39   8e-04
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    39   8e-04
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    28   1.5  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   4.7  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    26   6.2  
SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi...    26   8.2  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    26   8.2  

>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 675 NIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWXKELELCNTYLKLDE 854
           ++ E   + + EL      +K+ PK Y  ++ R W L     P+W  E+ +    L  D 
Sbjct: 82  SLNEKQDLLDNELKYVLSKMKVFPKVYWIFNHRRWCLENAPYPNWNYEMMITEKLLSADA 141

Query: 855 RNFTHG 872
           RNF HG
Sbjct: 142 RNF-HG 146



 Score = 37.5 bits (83), Expect = 0.003
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = +1

Query: 436 HGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPD 615
           HG ++V+ S                 ++  + + Q  RK     +  L+LT  +L  NP+
Sbjct: 2   HGILRVKLSEEQRKLKAEKERAKIEEYRGLVSRFQEARKRKDYSEGNLKLTTELLDWNPE 61

Query: 616 IYTLWNIRREI 648
            Y++WN RREI
Sbjct: 62  TYSVWNYRREI 72



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 699 YNAELHLTEYCLKINPKSYCAWHQREWVL 785
           +N E+ +TE  L  + +++  WH R +V+
Sbjct: 126 WNYEMMITEKLLSADARNFHGWHYRRYVV 154


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 22/74 (29%), Positives = 40/74 (54%)
 Frame = +3

Query: 639 ERNLQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWXKE 818
           ++N Q++      I  +++ Y  EL  T+   +I+ K+Y  W  R W+L  ++  D+ +E
Sbjct: 108 QKNYQVWHH-RQKILSLTKNYERELEFTKKMFEIDSKNYHVWSYRVWIL--QNFNDYSQE 164

Query: 819 LELCNTYLKLDERN 860
           L+L N  L+ D  N
Sbjct: 165 LKLTNELLEKDIYN 178



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 547 RKECTLDKELLELTGNVLSSNPDIYTLWNIRREIYNY 657
           +KE +L    L LTG ++ +NP  YT+W  R +I N+
Sbjct: 54  KKEYSL--RALNLTGFLIMNNPAHYTVWAYRFQILNH 88


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 565 DKELLELTGNVLSSNPDIYTLWNIRREIYNYLKKAMIILKKC 690
           ++E L+    VL  N  +  +WNIR     +++K   +L+KC
Sbjct: 113 NEEALKEIYRVLKPNGKLALIWNIRDNSVPWVEKCSQLLEKC 154


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 531 LHGMFENLQFFISLFLFPGFLFLRSSDFHSP 439
           L G+   L FFIS + FP F  L    + SP
Sbjct: 134 LTGLMSQLHFFISKWKFPNFSDLSKGFYISP 164


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 550  KECTLDKELLELTGNVLSSNPDIYTLWNIRREIYNYLKKAMIIL 681
            KE ++D+ + +  G +    P +   W+++REI N  K+  ++L
Sbjct: 945  KELSMDRYVEDTDGKMA---PLLQRYWDLKREIINLQKRQQLLL 985


>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
           Tom20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 618 LHFMEYKERNLQLFKKSNDNIEEMSQVYNAEL 713
           L FM+   R  QLF++  DNI+E +  + + L
Sbjct: 83  LFFMQQVARGEQLFQQQPDNIKESAACFYSAL 114


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 461 EVLTFTLPCSRKIIIKDYHLCLVEF 387
           +  TF L C+ K  IK Y  CL  F
Sbjct: 187 DYFTFKLECTHKYNIKVYEACLQSF 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,473
Number of Sequences: 5004
Number of extensions: 61025
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)