Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H06
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614...    51   1e-06
09_04_0722 + 19729331-19729582,19730535-19730644,19730810-197309...    41   0.002

>06_03_1119 +
           27760412-27760527,27760851-27761010,27761283-27761449,
           27761525-27761629,27762097-27762864,27762942-27763131,
           27763763-27763940,27764106-27764497
          Length = 691

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
 Frame = +3

Query: 681 EEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDP-DWXKELELCNTYLKLDER 857
           E +    + EL + E  L+ NPKSY AW+ R+W+L  +  P D+  E  L +  LK+D R
Sbjct: 80  EAIKSAIDDELRVVEVALRQNPKSYGAWYHRKWLLNQKLAPVDFKCEFGLLDKLLKVDAR 139

Query: 858 NFTHG 872
           NF HG
Sbjct: 140 NF-HG 143



 Score = 31.5 bits (68), Expect = 0.93
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 559 TLDKELLELTGNVLSSNPDIYTLWNIRREIYNY 657
           T  KE L L+  +L  NP+ YT WN R+  + +
Sbjct: 39  TYTKEALGLSFKLLEINPEAYTAWNYRKLAFQH 71


>09_04_0722 +
           19729331-19729582,19730535-19730644,19730810-19730930,
           19731080-19731175,19731429-19731838,19732251-19732309,
           19733235-19733287,19733432-19733485
          Length = 384

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +3

Query: 630 EYKERNLQLFKKSNDNIEEMS-QVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPD 806
           E   +N Q++       E++   + N E   T   L ++ K+Y AW  R+WVL       
Sbjct: 112 ECNPKNYQIWHHKRWLAEKLGPDIANKEHEFTRKILSMDAKNYHAWSHRQWVLQALG--G 169

Query: 807 WXKELELCNTYLKLDERN 860
           W  EL+ CN  L+ D  N
Sbjct: 170 WETELQYCNQLLEEDVFN 187



 Score = 35.1 bits (77), Expect = 0.075
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 678 IEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPD-WXKELELCNTYLKLDE 854
           +E +      E+   +   + NPK+Y  WH + W L  +  PD   KE E     L +D 
Sbjct: 93  LEALDADLREEMDFVDRIAECNPKNYQIWHHKRW-LAEKLGPDIANKEHEFTRKILSMDA 151

Query: 855 RNF 863
           +N+
Sbjct: 152 KNY 154



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 711 LHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWXKELELCNTYLKLDERNF 863
           LHLT   + +NP +Y  WH R  VL    D D  +E++  +   + + +N+
Sbjct: 69  LHLTAEVIDLNPGNYTVWHFRRLVLEAL-DADLREEMDFVDRIAECNPKNY 118



 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 577 LELTGNVLSSNPDIYTLWNIRREIYNYL 660
           L LT  V+  NP  YT+W+ RR +   L
Sbjct: 69  LHLTAEVIDLNPGNYTVWHFRRLVLEAL 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,893,792
Number of Sequences: 37544
Number of extensions: 300480
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)