Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_H06
(886 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y08200-1|CAA69382.1| 567|Homo sapiens rab geranylgeranyl transf... 77 1e-13
CR541797-1|CAG46596.1| 567|Homo sapiens RABGGTA protein. 77 1e-13
BC003093-1|AAH03093.1| 567|Homo sapiens Rab geranylgeranyltrans... 77 1e-13
L10413-1|AAA86285.1| 379|Homo sapiens farnesyl-protein transfer... 35 0.45
L00634-1|AAA35853.1| 379|Homo sapiens farnesyl-protein transfer... 35 0.45
BT009854-1|AAP88856.1| 379|Homo sapiens farnesyltransferase, CA... 35 0.45
BC084566-1|AAH84566.1| 379|Homo sapiens farnesyltransferase, CA... 35 0.45
BC037295-1|AAH37295.1| 214|Homo sapiens FNTA protein protein. 35 0.45
BC017029-1|AAH17029.2| 376|Homo sapiens FNTA protein protein. 35 0.45
BC053622-1|AAH53622.1| 403|Homo sapiens PTAR1 protein protein. 34 0.60
AL162412-2|CAI10945.2| 312|Homo sapiens protein prenyltransfera... 34 0.60
>Y08200-1|CAA69382.1| 567|Homo sapiens rab geranylgeranyl
transferase protein.
Length = 567
Score = 76.6 bits (180), Expect = 1e-13
Identities = 31/61 (50%), Positives = 43/61 (70%)
Frame = +3
Query: 681 EEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWXKELELCNTYLKLDERN 860
EE++ + AEL E CL++NPKSY WH R W+L +P+W +ELELC +L++DERN
Sbjct: 83 EELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERN 142
Query: 861 F 863
F
Sbjct: 143 F 143
Score = 60.5 bits (140), Expect = 8e-09
Identities = 29/76 (38%), Positives = 42/76 (55%)
Frame = +1
Query: 436 HGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPD 615
HGR+KV+TS +++ A Q + KR+ LD+ +LELT +L +NPD
Sbjct: 2 HGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD 61
Query: 616 IYTLWNIRREIYNYLK 663
TLWN RRE+ L+
Sbjct: 62 FATLWNCRREVLQQLE 77
>CR541797-1|CAG46596.1| 567|Homo sapiens RABGGTA protein.
Length = 567
Score = 76.6 bits (180), Expect = 1e-13
Identities = 31/61 (50%), Positives = 43/61 (70%)
Frame = +3
Query: 681 EEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWXKELELCNTYLKLDERN 860
EE++ + AEL E CL++NPKSY WH R W+L +P+W +ELELC +L++DERN
Sbjct: 83 EELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERN 142
Query: 861 F 863
F
Sbjct: 143 F 143
Score = 60.5 bits (140), Expect = 8e-09
Identities = 29/76 (38%), Positives = 42/76 (55%)
Frame = +1
Query: 436 HGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPD 615
HGR+KV+TS +++ A Q + KR+ LD+ +LELT +L +NPD
Sbjct: 2 HGRLKVKTSEVQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD 61
Query: 616 IYTLWNIRREIYNYLK 663
TLWN RRE+ L+
Sbjct: 62 FATLWNCRREVLQQLE 77
>BC003093-1|AAH03093.1| 567|Homo sapiens Rab
geranylgeranyltransferase, alpha subunit protein.
Length = 567
Score = 76.6 bits (180), Expect = 1e-13
Identities = 31/61 (50%), Positives = 43/61 (70%)
Frame = +3
Query: 681 EEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWXKELELCNTYLKLDERN 860
EE++ + AEL E CL++NPKSY WH R W+L +P+W +ELELC +L++DERN
Sbjct: 83 EELAALVKAELGFLESCLRVNPKSYGTWHHRCWLLGRLPEPNWTRELELCARFLEVDERN 142
Query: 861 F 863
F
Sbjct: 143 F 143
Score = 60.5 bits (140), Expect = 8e-09
Identities = 29/76 (38%), Positives = 42/76 (55%)
Frame = +1
Query: 436 HGRVKVRTSXXXXXXXXXXXXXXXXIFKHAMQKIQIKRKECTLDKELLELTGNVLSSNPD 615
HGR+KV+TS +++ A Q + KR+ LD+ +LELT +L +NPD
Sbjct: 2 HGRLKVKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPD 61
Query: 616 IYTLWNIRREIYNYLK 663
TLWN RRE+ L+
Sbjct: 62 FATLWNCRREVLQQLE 77
>L10413-1|AAA86285.1| 379|Homo sapiens farnesyl-protein transferase
alpha-subunit protein.
Length = 379
Score = 34.7 bits (76), Expect = 0.45
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +3
Query: 627 MEYKERNLQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPD 806
+E + +N Q++ +E + + EL L + K+Y AW R+WV+ ++
Sbjct: 159 IEEQPKNYQVWHHRRVLVEWLRDP-SQELEFIADILNQDAKNYHAWQHRQWVI--QEFKL 215
Query: 807 WXKELELCNTYLKLDERN 860
W EL+ + LK D RN
Sbjct: 216 WDNELQYVDQLLKEDVRN 233
>L00634-1|AAA35853.1| 379|Homo sapiens farnesyl-protein transferase
alpha-subunit protein.
Length = 379
Score = 34.7 bits (76), Expect = 0.45
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +3
Query: 627 MEYKERNLQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPD 806
+E + +N Q++ +E + + EL L + K+Y AW R+WV+ ++
Sbjct: 159 IEEQPKNYQVWHHRRVLVEWLRDP-SQELEFIADILNQDAKNYHAWQHRQWVI--QEFKL 215
Query: 807 WXKELELCNTYLKLDERN 860
W EL+ + LK D RN
Sbjct: 216 WDNELQYVDQLLKEDVRN 233
>BT009854-1|AAP88856.1| 379|Homo sapiens farnesyltransferase, CAAX
box, alpha protein.
Length = 379
Score = 34.7 bits (76), Expect = 0.45
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +3
Query: 627 MEYKERNLQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPD 806
+E + +N Q++ +E + + EL L + K+Y AW R+WV+ ++
Sbjct: 159 IEEQPKNYQVWHHRRVLVEWLRDP-SQELEFIADILNQDAKNYHAWQHRQWVI--QEFKL 215
Query: 807 WXKELELCNTYLKLDERN 860
W EL+ + LK D RN
Sbjct: 216 WDNELQYVDQLLKEDVRN 233
>BC084566-1|AAH84566.1| 379|Homo sapiens farnesyltransferase, CAAX
box, alpha protein.
Length = 379
Score = 34.7 bits (76), Expect = 0.45
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +3
Query: 627 MEYKERNLQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPD 806
+E + +N Q++ +E + + EL L + K+Y AW R+WV+ ++
Sbjct: 159 IEEQPKNYQVWHHRRVLVEWLRDP-SQELEFIADILNQDAKNYHAWQHRQWVI--QEFKL 215
Query: 807 WXKELELCNTYLKLDERN 860
W EL+ + LK D RN
Sbjct: 216 WDNELQYVDQLLKEDVRN 233
>BC037295-1|AAH37295.1| 214|Homo sapiens FNTA protein protein.
Length = 214
Score = 34.7 bits (76), Expect = 0.45
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +3
Query: 627 MEYKERNLQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPD 806
+E + +N Q++ +E + + EL L + K+Y AW R+WV+ ++
Sbjct: 68 IEEQPKNYQVWHHRRVLVEWLRDP-SQELEFIADILNQDAKNYHAWQHRQWVI--QEFKL 124
Query: 807 WXKELELCNTYLKLDERN 860
W EL+ + LK D RN
Sbjct: 125 WDNELQYVDQLLKEDVRN 142
>BC017029-1|AAH17029.2| 376|Homo sapiens FNTA protein protein.
Length = 376
Score = 34.7 bits (76), Expect = 0.45
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = +3
Query: 627 MEYKERNLQLFKKSNDNIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPD 806
+E + +N Q++ +E + + EL L + K+Y AW R+WV+ ++
Sbjct: 156 IEEQPKNYQVWHHRRVLVEWLRDP-SQELEFIADILNQDAKNYHAWQHRQWVI--QEFKL 212
Query: 807 WXKELELCNTYLKLDERN 860
W EL+ + LK D RN
Sbjct: 213 WDNELQYVDQLLKEDVRN 230
>BC053622-1|AAH53622.1| 403|Homo sapiens PTAR1 protein protein.
Length = 403
Score = 34.3 bits (75), Expect = 0.60
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 547 RKECTLDKELLELTGNVLSSNPDIYTLWNIRREI 648
RK+ EL+++T +L NPD T WN+R+E+
Sbjct: 79 RKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKEL 112
>AL162412-2|CAI10945.2| 312|Homo sapiens protein prenyltransferase
alpha subunit repeat containing 1 protein.
Length = 312
Score = 34.3 bits (75), Expect = 0.60
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +1
Query: 547 RKECTLDKELLELTGNVLSSNPDIYTLWNIRREI 648
RK+ EL+++T +L NPD T WN+R+E+
Sbjct: 78 RKQWLNRDELIDVTCTLLLLNPDFTTAWNVRKEL 111
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,048,299
Number of Sequences: 237096
Number of extensions: 1874894
Number of successful extensions: 6770
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6770
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -