Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H06
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    66   2e-11
AF038615-3|AAB94144.1|  328|Caenorhabditis elegans Hypothetical ...    39   0.005
Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 33/67 (49%), Positives = 41/67 (61%)
 Frame = +3

Query: 663 KSNDNIEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWXKELELCNTYL 842
           KS+  IE +      EL L+  C+K NPKSY AW+QR W L  +  PD+ KEL LC   L
Sbjct: 96  KSSQKIENLLA---GELFLSYECIKSNPKSYSAWYQRAWALQRQSAPDFKKELALCEKAL 152

Query: 843 KLDERNF 863
           +LD RNF
Sbjct: 153 QLDCRNF 159



 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 22/43 (51%), Positives = 26/43 (60%)
 Frame = +1

Query: 514 FKHAMQKIQIKRKECTLDKELLELTGNVLSSNPDIYTLWNIRR 642
           F H   KI  KR++   D E+L LT  +L  N DIYT WNIRR
Sbjct: 28  FLHVRDKIVAKREKGEYDDEILSLTQAILEKNADIYTFWNIRR 70


>AF038615-3|AAB94144.1|  328|Caenorhabditis elegans Hypothetical
           protein R02D3.5 protein.
          Length = 328

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 642 RNLQLFKKSNDNIEEMSQ-VYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWXKE 818
           +N Q++      +E + +   N ELH     ++   K+Y AW  R+WV+ T   P   KE
Sbjct: 110 KNYQVWHHRRFIVETIGESAVNDELHFCSEVIRDENKNYHAWQHRQWVVRTFKVP-LEKE 168

Query: 819 LELCNTYLKLDERN 860
           L      L LD RN
Sbjct: 169 LTFALHMLLLDNRN 182



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 13/62 (20%), Positives = 30/62 (48%)
 Frame = +3

Query: 678 IEEMSQVYNAELHLTEYCLKINPKSYCAWHQREWVLLTRDDPDWXKELELCNTYLKLDER 857
           + E+      E+      ++ +PK+Y  WH R +++ T  +     EL  C+  ++ + +
Sbjct: 87  LTELGWDLKKEMRYLSDIIQESPKNYQVWHHRRFIVETIGESAVNDELHFCSEVIRDENK 146

Query: 858 NF 863
           N+
Sbjct: 147 NY 148



 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +3

Query: 717 LTEYCLKINPKSYCAWHQREWVLLTRDDPDWXKELELCNTYLKLDERNF 863
           L E C+++NP +Y  W  R  V LT    D  KE+   +  ++   +N+
Sbjct: 65  LLEDCIRLNPANYTVWQYRR-VCLTELGWDLKKEMRYLSDIIQESPKNY 112


>Z77662-5|CAB01192.2|  579|Caenorhabditis elegans Hypothetical
           protein F47B8.5 protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 589 LSVPVILYQECILFS*FEFFAWHV*KSSIFHF 494
           L+ P I+++   LFS F FF +    +S FHF
Sbjct: 303 LTKPAIIFEAICLFSLFSFFNFITFSTSHFHF 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,221,667
Number of Sequences: 27780
Number of extensions: 330777
Number of successful extensions: 797
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)