Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H03
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    42   1e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    38   0.003
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    35   0.015
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.18 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   2.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   3.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   5.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +1

Query: 568 PXPXKXXXXAXPPPXPXXRPXAXAGXPPXPPPPPXXTKXGGR 693
           P P        PPP P     A AG PP PPPPP  +  G R
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791



 Score = 35.1 bits (77), Expect = 0.015
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = +1

Query: 568 PXPXKXXXXAXPPPXPXXRPXAXAGXPPXPPPPPXXTKXGGRXXXXGGPPP 720
           P P        P P P   P    G PP PPPPP     G        PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVA--GAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 20/58 (34%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
 Frame = +1

Query: 580 KXXXXAXPPPXPXXRPXAXAGXP-PXPPPPPXXTKXGGRXXXXGGPPPXXKXXXXGPP 750
           K    + PPP P       A  P P PPP P     GG       PPP       GPP
Sbjct: 726 KLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPI---MGGPPP----PPPPPGVAGAGPP 776



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 19/73 (26%), Positives = 20/73 (27%)
 Frame = +2

Query: 521 PPPXGGGXSXPPXGGXPRPEXXXXXPXRPPPPXXGRXRXRXXPPAXPPXXXXLKXGVGXX 700
           PPP       P     P P         PPPP          PP  PP         G  
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP---AVSAGGS 790

Query: 701 XXGAPPPXXKXXP 739
              AP P  +  P
Sbjct: 791 RYYAPAPQAEPEP 803


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 28/110 (25%), Positives = 31/110 (28%), Gaps = 3/110 (2%)
 Frame = +1

Query: 574  PXKXXXXAXPPPXPXXRPX---AXAGXPPXPPPPPXXTKXGGRXXXXGGPPPXXKXXXXG 744
            P      A P P P   P    + +G P  PPP P  +          G PP        
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI- 1091

Query: 745  PPXXXXXXXXXXXXPXXXXXPPPPXPXRXXAPPXXRXXGPPFXXXXGAPP 894
            PP                  PP P P      P      PP     GAPP
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPP 1141



 Score = 34.7 bits (76), Expect = 0.019
 Identities = 32/117 (27%), Positives = 33/117 (28%), Gaps = 2/117 (1%)
 Frame = +1

Query: 550  PPXRGGPXPXKXXXXAXPPPXPXXR-PXAXAGXPPXPPPPPXXTKXGGRXXXXGGPPPXX 726
            P   G P   K    A P P P    P   A  P   PP P  +          G PP  
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPSGAPPVP 1143

Query: 727  KXXXXGPPXXXXXXXXXXXXPXXXXXPPPPXPXRXXAP-PXXRXXGPPFXXXXGAPP 894
            K     PP            P     PP P P     P P      PP      APP
Sbjct: 1144 KPSVAAPPVPAPSGAPPVPKPSVAA-PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199



 Score = 34.3 bits (75), Expect = 0.026
 Identities = 26/100 (26%), Positives = 28/100 (28%), Gaps = 3/100 (3%)
 Frame = +1

Query: 604  PPXPXXRPXAXAGXPPXP---PPPPXXTKXGGRXXXXGGPPPXXKXXXXGPPXXXXXXXX 774
            PP P  +P   A   P P   PP P  +          G PP  K     PP        
Sbjct: 1121 PPVP--KPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178

Query: 775  XXXXPXXXXXPPPPXPXRXXAPPXXRXXGPPFXXXXGAPP 894
                      PP P P      P      PP      APP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
 Frame = +1

Query: 568  PXPXKXXXXAXPPPXPXXRPXAXAGXPPXPPP---PPXXTKXGG 690
            P P        PP      P    G PP PPP   PP  T   G
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 30/124 (24%), Positives = 30/124 (24%), Gaps = 9/124 (7%)
 Frame = +1

Query: 550  PPXRGGPXPXKXXXXAXPPPXPXXRPXAX---AGXPPXPPPP--PXXTKXGGRXXXXGGP 714
            P   G P   K    A P P P   P         PP P P   P   K          P
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174

Query: 715  ----PPXXKXXXXGPPXXXXXXXXXXXXPXXXXXPPPPXPXRXXAPPXXRXXGPPFXXXX 882
                PP  K     PP            P     P PP       P       P      
Sbjct: 1175 SSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTA 1234

Query: 883  GAPP 894
             APP
Sbjct: 1235 KAPP 1238


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 23/88 (26%), Positives = 25/88 (28%)
 Frame = +1

Query: 601 PPPXPXXRPXAXAGXPPXPPPPPXXTKXGGRXXXXGGPPPXXKXXXXGPPXXXXXXXXXX 780
           PPP       A A     PPPPP  ++        G            PP          
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIP 352

Query: 781 XXPXXXXXPPPPXPXRXXAPPXXRXXGP 864
             P     PPPP P    AP   R   P
Sbjct: 353 LPPQGRSAPPPPPP--RSAPSTGRQPPP 378



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
 Frame = -1

Query: 437 PPPRGGGFXXXPX-----TXXPPPPPXRXPXXGRR 348
           PPPR       P      +  PPPPP   P  GR+
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQ 375



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = +1

Query: 550 PPXRGGPXPXKXXXXAXPPPXPXXRPXAXAGXPPXPPPPP 669
           PP    P        + PP  P   P      PP PP  P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAP 454


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = +1

Query: 550  PPXRGGPXPXKXXXXAXPPPXPXXRPXAXAGXPPXPPPP 666
            PP    P P        PPP     P   AG P  PPPP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPP---SAPPMPAGPPSAPPPP 1734


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 17/40 (42%), Positives = 17/40 (42%)
 Frame = -1

Query: 668 GGGGGXGGXPAXAXGLXXGXGGGXAXXXXFXGXGPPLXGG 549
           GG GG GG P    G   G GGG        G GP   GG
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGG----FGGGPGGHGG 270



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/47 (34%), Positives = 16/47 (34%)
 Frame = -3

Query: 663 GGXAGGXXRXRXRPXXGGGGRXGXXXXFSGRGXPPXGGXXXPPPXGG 523
           GG  GG       P   GGG  G      G G  P G    P   GG
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 668 GGGGGXGGXPAXAXGLXXGXGGG 600
           GG GG GG P    G   G GGG
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGG 243


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/76 (25%), Positives = 19/76 (25%), Gaps = 1/76 (1%)
 Frame = +2

Query: 524 PPXGGGXSXPPXGGXPRPEXXXXXPXRPPP-PXXGRXRXRXXPPAXPPXXXXLKXGVGXX 700
           PP       PP    PRP      P   PP P          PP   P            
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189

Query: 701 XXGAPPPXXKXXPXAP 748
              A PP     P  P
Sbjct: 190 LPSAVPPMPPKVPPPP 205



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +1

Query: 568 PXPXKXXXXAXPPPXPXXRPXAXAGXPPXPPPPP 669
           P P +       PP     P A    PP  PPPP
Sbjct: 172 PPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 646 PPXPPPPPXXTKXGGR 693
           PP PPPPP  +  GG+
Sbjct: 946 PPPPPPPPLVSAAGGK 961


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 604 PPXPXXRPXAXAGXPPXPPPPPXXTK 681
           PP P   P       P PPPPP   K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVK 34



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 601 PPPXPXXRPXAXAGXPPXPPPPPXXTKXGGRXXXXGG 711
           PPP P   P +    PP PPPP    K   +     G
Sbjct: 12  PPPPPGFEPPSQ---PPPPPPPGYVKKRKNKTPAQSG 45



 Score = 26.2 bits (55), Expect = 6.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 436 PPPAGGDXFXRPXXXXPPPPP 374
           PPP     F  P    PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 9.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 601 PPPXPXXRPXAXAGXPPXPPPPP 669
           PP  P   P      PP  PPPP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 613 PXXRPXAXAGXPPXPPPPP 669
           P     A  G PP PPPPP
Sbjct: 295 PSSGDSANGGLPPPPPPPP 313


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/45 (33%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
 Frame = +1

Query: 550  PPXRGGPXPXKXXXXAXP--PPXPXXRPXAXAGXPPXPPPPPXXT 678
            PP    P P        P  PP     P   A  P  P PPP  T
Sbjct: 1035 PPTVSVPSPSALSPSVTPQLPPVSSRLPPVSATRPQIPQPPPVST 1079


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.145    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,077
Number of Sequences: 5004
Number of extensions: 30281
Number of successful extensions: 168
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)