Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H01
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    29   0.66 
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    28   1.5  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    27   2.7  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.5  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   8.1  

>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = +3

Query: 195 AAKRVVQEQKRKECITAANDLTQALVDHLNVGVAQAYLNQKKLDAEAKLLHQGAINFSKQ 374
           A  +VVQE          NDL ++L + LN     AY+ +KK++ + +L      N + +
Sbjct: 677 AVNKVVQEDILFAIDNVYNDLAESLHEQLN-----AYIQRKKINKKNQL------NGNDE 725

Query: 375 TQQWLTLVENFSSALKE---IGDVENW 446
           TQ  +  +  F    KE   + DV +W
Sbjct: 726 TQNLVLALNKFGCFAKEMVCLRDVNDW 752


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +2

Query: 281 KCRCCSSLFKSEKVRCGSKTFTPRC--NKFFQTNTAMVDSCGKFQQCSQRNWGCRKLGTK 454
           +C  C ++ K  +     K F P C  N   +T T  ++S G+FQ   ++N+  +  GTK
Sbjct: 255 RCHGCYTVVKDME-----KKFCPSCGGNTLIKT-TCSINSKGEFQVHLKKNFEWKTRGTK 308

Query: 455 Y 457
           Y
Sbjct: 309 Y 309


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +2

Query: 353 CNKFFQTNTAMVDSCG-KFQQCSQRNWGCRKLGTKYRK*YENYYRHFXKEHMKKHKRNQA 529
           CN  F  +  +   C  K ++C   +    +   +Y K Y++  RHF K+H    +R + 
Sbjct: 250 CNTHFYDDDELFKHCREKHERCYICDQVAGRPTHQYFKNYDSLERHFEKDHYICRER-EC 308

Query: 530 VVNKVIVLDT 559
           +  K +V  T
Sbjct: 309 LERKFVVFGT 318


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
 Frame = +3

Query: 291 VAQAYLNQKKLDAE--AKLLH-QGAINFSKQTQQWLTLVENFSSAL---KEIGDVENWAR 452
           +A  +L+  K + E    L + +G    +  TQ W  L+ENF S L   +E  ++  W+ 
Sbjct: 468 IAIKFLDDAKCETEDSTNLTNREGEAEKTLNTQPWKNLIENFISELQAEEEENNITEWSD 527

Query: 453 --SIEND 467
             S+ ND
Sbjct: 528 IISVRND 534


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 260  TSIGRSFKCRCCSSLFKSEKVRCGSKTFTPRCNKFFQTNTAMVDSC 397
            T + +    RC   LFK++ +    K F   C +    N  ++D C
Sbjct: 1201 TPVQQQLLRRCLEILFKTKDLSTVKKEFQNVCYQIMSGNVPVMDFC 1246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,958
Number of Sequences: 5004
Number of extensions: 42208
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)