Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_H01
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.6  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.7  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -1

Query: 570 FIKNVSRTITLLTTAWFLLCFFICSXLKCL**FSYHFLYFVP 445
           F   +   I      W+ +C+ I +   C+  F+++ + FVP
Sbjct: 475 FYDGIRDMIGYYPCCWWKICWTITTPAICVGVFTFNIIKFVP 516


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -1

Query: 570 FIKNVSRTITLLTTAWFLLCFFICSXLKCL**FSYHFLYFVP 445
           F   +   I      W+ +C+ I +   C+  F+++ + FVP
Sbjct: 528 FYDGIRDMIGYYPCCWWKICWTITTPAICVGVFTFNIIKFVP 569


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -2

Query: 452  SCPVFDIPNFFESTAEIFHKSQP 384
            S     +PN F     +FH+ QP
Sbjct: 982  SLGALSVPNIFVKDVLVFHQGQP 1004


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 465 HFLYFVPSFRHPQFL*EHC*NFPQ-ESTIAVFVWKNLLH 352
           HF YF+ +  +P F+  +  NFPQ       F+ K +L+
Sbjct: 230 HF-YFMLNHNYPPFMLSNSLNFPQIRGEFYFFLHKQVLN 267


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 465 HFLYFVPSFRHPQFL*EHC*NFPQ-ESTIAVFVWKNLLH 352
           HF YF+ +  +P F+  +  NFPQ       F+ K +L+
Sbjct: 230 HF-YFMLNHNYPPFMLSNSLNFPQIRGEFYFFLHKQVLN 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,598
Number of Sequences: 438
Number of extensions: 3012
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)