Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G24
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac...    29   0.90 
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    29   0.90 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   3.6  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   6.3  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    26   6.3  
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi...    26   6.3  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   8.4  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    26   8.4  

>SPCC1827.02c |||cholinephosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +3

Query: 501 WPRTLRDIGWWPVKMYPYSNSDYGERKDPMEGYRRPNMRTSVGLTGPATFWRERCS 668
           W  T RD+          + +DY  +K+P+ G   P+     G  G    W +R S
Sbjct: 274 WVSTTRDLKADIKSFLSMATTDYQLQKNPLHGSSEPSSPGPTGFLGGINRWMQRRS 329


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 623 GGFDGTSNVLAGKMFNIPVKGTHAHSF 703
           G F GTSNV     +N+ V GT AH +
Sbjct: 199 GSFLGTSNVYFAAKYNLNVSGTVAHEW 225


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 179 FDLFFRTNPFQGEFTIFAGLEECMKFLEN 265
           FDLF   NP    F+IF  L  C   + +
Sbjct: 608 FDLFLEKNPIPQLFSIFTSLNHCKSLISS 636


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
 Frame = -1

Query: 717 LKDVTNECAWVPFTGILNIFPARTLLV-PSNPPMYAYLDADSPPSGPCALRSPNSSRDTF 541
           L+D +N    + +TG   + P+ T+   P N P++      + P GP      NS    +
Sbjct: 16  LEDYSNVA--INYTGPY-LTPSGTMAYHPGNAPLFTQAPPHTNPQGPPPFPLFNSISPVY 72

Query: 540 LPATIRYLAAFVAIKLAKLTNVSRVVSNSCATMSGP 433
            PAT R L   V  +++  T +    +   A   GP
Sbjct: 73  DPATGRLLYRNVNTQVSH-TAIPNPANGYAAVYGGP 107


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 241  GVYEIFRKLSLF*QRYQIFEANI 309
            G+Y++  +LS+  Q  QIFE NI
Sbjct: 1295 GLYDLRSRLSIIPQESQIFEGNI 1317


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 219 NSPWNGFVRKNKSNTATS 166
           NS W GF++K  SN  TS
Sbjct: 3   NSKWGGFLKKAMSNVETS 20


>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 566 LRRAQGPDGGLSASKYAYIGGFDGTSN 646
           +R  Q P  G+SA K+A    FDG ++
Sbjct: 270 VRTQQKPPNGISAPKHARCASFDGDAD 296


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 266  FHYSNSDIKYLKQTLPENIEPEFYLYLKELTCKDIIVSAIEE 391
            FH SN +I  L +     I P  Y Y+KE   K ++   +EE
Sbjct: 991  FHSSNPNIVNLIKN-DVYISPNGYAYVKENVRKSLLAKMLEE 1031


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 636 PSNPPMYAYLDADSPPSGPCALRSPNS 556
           PS+  ++A L AD+  S P A RSP S
Sbjct: 37  PSSTGLFATLVADTNSSVPSASRSPES 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,694,588
Number of Sequences: 5004
Number of extensions: 77822
Number of successful extensions: 226
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)