Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G22
         (965 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    30   0.42 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.56 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   4.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.2  

>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = +2

Query: 539 GGRGXRXXPPPRXEXGGPXXXGEPPGXXRGPXGGKG 646
           G R     PPPR    GP   G   G   GP GG G
Sbjct: 92  GHRAYYAPPPPRGPLFGPRIGGGHHGPLHGPHGGFG 127


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.56
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 799 PXGEXPXGXXPPGVXPPGRXXPEPP 873
           P G  P    PPG  PP +  P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 814 PXGXXPPGVXPPGRXXPEPPXXAXPP 891
           P G  PP   PPG   P  P    PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
 Frame = +1

Query: 760  PAGXXP-RXPRXACPXGEXPXGXXPPGVXPPGRXXPEPPXXAXPP 891
            P+G  P   P  A P    P    PP   P     P PP    PP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +1

Query: 829 PPGVX-PPGRXXPEPPXXAXPPXRGXPG 909
           PPG+  PPG   P P   A P   G PG
Sbjct: 526 PPGMALPPGMPAPFPGYPAVPAMPGIPG 553


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = +1

Query: 757 TPAGXXPRXPRXACPXGEXPXGXXPPGVXPPGRXXPEPPXXA 882
           TPA      P  A   G  P    PPGV   G   P PP  A
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/37 (37%), Positives = 14/37 (37%)
 Frame = +2

Query: 563 PPPRXEXGGPXXXGEPPGXXRGPXGGKGAXXPKXXPP 673
           PPP    GGP     PPG       G G   P   PP
Sbjct: 752 PPPAPIMGGPPPPPPPPG-----VAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,432
Number of Sequences: 5004
Number of extensions: 12136
Number of successful extensions: 49
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)