Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G20
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038619-4|AAB92074.1|  340|Caenorhabditis elegans Hypothetical ...    60   2e-09
Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical pr...    60   2e-09
U88177-7|AAB42288.1|  339|Caenorhabditis elegans Hypothetical pr...    58   6e-09
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>AF038619-4|AAB92074.1|  340|Caenorhabditis elegans Hypothetical
           protein F56A11.5 protein.
          Length = 340

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
 Frame = +3

Query: 420 KKIKIPE-NWTKVGTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEKNN 596
           KK   P+  W  VG +K+++ YPIKSC    + +  C+  G + G   DR  +VI+    
Sbjct: 33  KKYSKPKAEWVPVGRIKSLHLYPIKSCKGKEVFQYRCTPFGPRLGEYLDRHFLVINSDGK 92

Query: 597 FVTARAFPELLTVQPTIRSSILTVKHAQMEPXHVNLAEVAALQKSKTAYV 746
           F TAR  P+++ ++  I+  I+ V +   E     + +V A +  ++ ++
Sbjct: 93  FYTARTKPQMVLIETLIKDGIVRVSYPGREDAQFKIEDVKANKDLRSGFL 142


>Z83106-6|CAB05497.2|  339|Caenorhabditis elegans Hypothetical
           protein F22B8.7 protein.
          Length = 339

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
 Frame = +3

Query: 435 PENWTKVGTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEK-NNFVTAR 611
           P  W  VG +K+++ +PIKSC  V +   +C+ LG   G L DR  M+++E    F+TAR
Sbjct: 36  PREWVPVGVVKSLHIFPIKSCKSVDVFAFKCTKLGPVMGDLEDRAFMLVEESTGKFITAR 95

Query: 612 AFPELLTVQPTIRSSILTVKHAQMEPXHVNLAEVAALQKSKT 737
             P+L+ V+  +   +L V         V+L +V  LQ  +T
Sbjct: 96  QKPKLVHVENYMTDGMLEVTVPGQPKLSVDLRKV--LQNKRT 135


>U88177-7|AAB42288.1|  339|Caenorhabditis elegans Hypothetical
           protein F53E10.1 protein.
          Length = 339

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
 Frame = +3

Query: 444 WTKVGTLKAINAYPIKSCAPVMLEKAECSILGLKDGWLRDRVVMVIDEK-NNFVTARAFP 620
           W  +G +K ++ YPIKSC PV +   +C+ LG     L DRV ++++E    F+TAR  P
Sbjct: 39  WVPIGIVKGLHIYPIKSCKPVDVFAFKCTKLGPMMEELEDRVFVLVEESTGKFITARQKP 98

Query: 621 ELLTVQPTIRSSILTVKHAQMEPXHVNLAEV 713
           +L+ V+  +   IL +         V+L +V
Sbjct: 99  KLVNVESYMTDGILEISVPGHPKLSVDLKKV 129


>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 76   INLLFDPHIIPDFTKQFN*TISLHYNCTLENI 171
            +NLL D   + +F ++ N  IS+HY  T +N+
Sbjct: 3392 VNLLSDSEWLREFHREVNKRISIHYRYTSDNL 3423


>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
            T04F3.1 protein.
          Length = 3517

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 76   INLLFDPHIIPDFTKQFN*TISLHYNCTLENI 171
            +NLL D   + +F ++ N  IS+HY  T +N+
Sbjct: 3392 VNLLSDSEWLREFHREVNKRISIHYRYTSDNL 3423


>Z81142-6|CAB03508.1|  344|Caenorhabditis elegans Hypothetical
           protein ZK1037.9 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 371 CAWRCLLRLSPVLSRKQEDKNTRKLD*SRNAQSYQRLSN*IM 496
           C    +L L  V+  ++ DKN ++L    NAQ +QR++  ++
Sbjct: 223 CVLFPILSLLLVIEIRKADKNQKRLTAPTNAQDFQRITRLVL 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,226,920
Number of Sequences: 27780
Number of extensions: 314966
Number of successful extensions: 683
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)