Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G19
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    29   3.2  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    29   3.2  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    29   3.2  

>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform a
            protein.
          Length = 2322

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +2

Query: 545  LTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSPSGSVALSHS 724
            LT   K++  V       D+    RF     + +   R   L D    FS  G++ALS  
Sbjct: 1032 LTKFEKLNNTVNEKRQVVDWSARERFQFVESAFSQTMRRTELLDIQKDFSAMGALALSAD 1091

Query: 725  SRCRYLSSV 751
            S C+  S +
Sbjct: 1092 SSCKLYSDI 1100


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
            morphological effecton genitalia protein 1, isoform b
            protein.
          Length = 2019

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +2

Query: 545  LTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSPSGSVALSHS 724
            LT   K++  V       D+    RF     + +   R   L D    FS  G++ALS  
Sbjct: 1032 LTKFEKLNNTVNEKRQVVDWSARERFQFVESAFSQTMRRTELLDIQKDFSAMGALALSAD 1091

Query: 725  SRCRYLSSV 751
            S C+  S +
Sbjct: 1092 SSCKLYSDI 1100


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-mediated
            mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +2

Query: 545  LTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCPPFSPSGSVALSHS 724
            LT   K++  V       D+    RF     + +   R   L D    FS  G++ALS  
Sbjct: 1032 LTKFEKLNNTVNEKRQVVDWSARERFQFVESAFSQTMRRTELLDIQKDFSAMGALALSAD 1091

Query: 725  SRCRYLSSV 751
            S C+  S +
Sbjct: 1092 SSCKLYSDI 1100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,504,633
Number of Sequences: 27780
Number of extensions: 390325
Number of successful extensions: 1034
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)