Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G18
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    27   4.8  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.4  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.4  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.5  

>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 537 EHCRTRRPIVPLCRSLRALACTSSLKWNASERGSTA*VMFFRACSRLHRIIRRCHVKGI 713
           E  R+  P+  +   L    C +SL  +   +G  + V  F AC R  R+ R   ++GI
Sbjct: 442 EGLRSFEPLT-IATPLSVYGCINSLSLSLQGKGKQSEVRVFAACGRETRVGRWKTLRGI 499


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 272 FLMTLSRSTIVSKPTLQTTDFLFFYFVACCI 180
           FL  LS+  IV   +     FLFF+F+  C+
Sbjct: 135 FLFFLSQIFIVYFSSFPILHFLFFFFLCVCV 165


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 589 LSLALQALNGTPQSEVAPHESCF 657
           +S AL+ L  TP S    HE CF
Sbjct: 30  ISEALELLRETPSSPTVVHEQCF 52


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 409  YKYICQYFFLQCTLFFYNYELYYCIAAVHA 498
            Y +I Q  FLQ  L     ELYY I ++ A
Sbjct: 2199 YAHIAQQLFLQNELHRCGEELYYLIESIAA 2228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,634
Number of Sequences: 5004
Number of extensions: 67136
Number of successful extensions: 191
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)