Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G18
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.72 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 501  CIAHSSR-RETDVEHCRTRRPIVPLCRSLRALACTSS-LKWNASERGSTA 644
            C  H ++ +ETD + C T RP+V       A+   S   K++  E+   A
Sbjct: 1687 CTIHRTQVKETDDKICFTMRPVVSCASGCTAVETKSKPYKFHCMEKNEAA 1736


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 71   FCVRXSARATLPTTGAQSEPARPVPSAN 154
            F V     ATL  TG    PAR +P  N
Sbjct: 1542 FAVAEYEFATLTVTGGTIAPARELPDVN 1569


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 659 KKHDSCGATSL*GVP 615
           K HD+CG  +L G+P
Sbjct: 324 KIHDTCGVHNLHGMP 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,050
Number of Sequences: 438
Number of extensions: 4897
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)