Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G16
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.16c |spt4||transcription elongation factor complex subu...    83   4e-17
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    30   0.39 
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    27   2.7  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    27   3.6  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    26   6.3  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   8.4  

>SPBC21C3.16c |spt4||transcription elongation factor complex subunit
           Spt4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 105

 Score = 83.4 bits (197), Expect = 4e-17
 Identities = 40/99 (40%), Positives = 57/99 (57%)
 Frame = +2

Query: 206 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCK 385
           RACL+C ++     F  +GC N           D+V   TS  F+G++A+M+P +SWV +
Sbjct: 10  RACLICGIVLPHSVFANKGCPN--------DGVDDVETFTSPVFEGIMAMMSPTESWVAR 61

Query: 386 WQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRD 502
           WQRI  F  G+YA  V G L   V+  ++ RGI YRPR+
Sbjct: 62  WQRIDTFTPGIYATRVQGVLNEDVVESLRRRGINYRPRN 100


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 317 DCTSNNFDGMIAVMNPEDSWVCKWQRISRFCKGVYAISVSG 439
           D T+ N   M+AV+N  +    +W R S FCKG+Y I   G
Sbjct: 70  DATTQN-PFMLAVVNSNED-ARRWIRRSIFCKGIYEIYCIG 108


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 361 IHYCNHSIKVITCAIIDIIFVTFHA 287
           ++  + SI VI CA+ D+ + T HA
Sbjct: 609 VNILSSSISVIECAVNDVFYATVHA 633


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -3

Query: 442 PSRNRYCINSFTK---STNSLPFANPAVFRIHYCNHSIKVITCAIIDIIFVT 296
           PS+  + +  ++    + ++LPF NP +F   + + S   IT   I ++F T
Sbjct: 399 PSKEVFPLEKYSSEPWNLHNLPFENPCLFNYSFSDLSSLTITRLSIGMVFYT 450


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 499 PWAIGNTSTLH-FSYYTCWQPSRNRYCINSFTKSTN 395
           P ++G++ +L  F  +     + N  C+NSF+KS N
Sbjct: 178 PESVGSSKSLKIFKNFLSLADTPNIQCVNSFSKSAN 213


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
 Frame = +2

Query: 164 IMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLR---MKSNKDNVYDCTSNN 334
           IM ++    ELRG+    +C L   F  F+Y   D    FL    ++  K ++       
Sbjct: 683 IMWLKINDLELRGIVINSLCKLFTKFSNFDYLFEDRTVTFLTDFIIRKQKAHLSADQCKQ 742

Query: 335 FDGMIAVMNPEDSWVCKWQRISRFCK 412
              ++   +PE   V +  R+S   K
Sbjct: 743 LANVLTQASPEAKTVLEQHRLSEMRK 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,239
Number of Sequences: 5004
Number of extensions: 51877
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)