Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G16
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1317 - 25746608-25746703,25747001-25747135                       62   4e-10
05_01_0243 - 1806770-1806832,1806942-1807061,1807275-1807457,180...    29   3.8  
10_06_0032 + 9844812-9844881,9845759-9845958                           29   5.0  
10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544           28   8.8  

>07_03_1317 - 25746608-25746703,25747001-25747135
          Length = 76

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +2

Query: 203 LRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDG 343
           LRACL C L+KT+DQF  +GC+NC  FL M+ + DNV +CT+ NF G
Sbjct: 31  LRACLRCRLVKTYDQFMEQGCENC-PFLDMERDHDNVVNCTTPNFTG 76


>05_01_0243 -
           1806770-1806832,1806942-1807061,1807275-1807457,
           1807554-1807693,1807768-1808010,1808664-1808781,
           1808902-1808977,1809054-1809120,1809201-1809288,
           1809381-1809491,1809632-1809799,1809946-1810040,
           1810123-1810162,1810242-1810318,1810607-1810655,
           1810756-1810812,1810959-1811048,1811160-1811223,
           1812085-1812245
          Length = 669

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 344 MIAVMNPEDSWVCKWQRISRFCKGVYA-ISVSGRLPAGVIREMKS 475
           ++AV+NP +    KW   S  CKG +A I  S  L   +++E++S
Sbjct: 560 LVAVVNPHEENTMKWAE-SNGCKGSFAEICKSEGLKEHILKELQS 603


>10_06_0032 + 9844812-9844881,9845759-9845958
          Length = 89

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 386 ICKPSCLQDSLLQSFHQSYYLCNHRHYLCYFSCEEIHHNCHSLHI 252
           +CK +C   ++ +  H + Y C  R   C F    I  + H LH+
Sbjct: 45  LCKWNCELVAMKRGGHLTSYECGDRECKCDFCASSIGADEHGLHV 89


>10_01_0163 - 1850018-1850033,1850184-1850271,1850824-1854544
          Length = 1274

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 161 SIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEF 283
           +I+ +    +E +  R+ LVC+ +K+  +  YE  D  DEF
Sbjct: 44  AILDVIQDAEEKKNHRSGLVCAWLKSLKKVSYEAIDVFDEF 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,784,512
Number of Sequences: 37544
Number of extensions: 290247
Number of successful extensions: 748
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)