Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_G16
(897 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U43923-1|AAB07814.1| 117|Homo sapiens SUPT4H protein. 193 8e-49
U38818-1|AAB18674.1| 117|Homo sapiens SUPT4H protein. 193 8e-49
U38817-1|AAB18675.1| 117|Homo sapiens SUPT4H protein. 193 8e-49
CR407663-1|CAG28591.1| 117|Homo sapiens SUPT4H1 protein. 193 8e-49
BC002802-1|AAH02802.1| 117|Homo sapiens suppressor of Ty 4 homo... 193 8e-49
AK129758-1|BAC85230.1| 135|Homo sapiens protein ( Homo sapiens ... 169 2e-41
Z75048-1|CAA99340.1| 445|Homo sapiens homogentisate 1,2-dioxyge... 32 2.5
U63008-1|AAB16836.1| 445|Homo sapiens homogentisate dioxygenase... 32 2.5
BC071757-1|AAH71757.1| 445|Homo sapiens homogentisate 1,2-dioxy... 32 2.5
AF045167-1|AAC02698.1| 445|Homo sapiens homogentisate 1,2-dioxy... 32 2.5
AF000573-1|AAC51650.1| 445|Homo sapiens homogentisate 1,2-dioxy... 32 2.5
Z49825-1|CAA89989.1| 504|Homo sapiens hepatocyte nuclear factor... 31 5.7
X87872-1|CAA61135.1| 408|Homo sapiens Hepatocyte nuclear factor... 31 5.7
X87871-1|CAA61134.1| 465|Homo sapiens Hepatocyte nuclear factor... 31 5.7
X87870-1|CAA61133.1| 455|Homo sapiens Hepatocyte nuclear factor... 31 5.7
X76930-1|CAA54248.1| 465|Homo sapiens hepatocyte nuclear factor... 31 5.7
X63522-1|CAA45087.1| 533|Homo sapiens retinoic acid X receptor ... 31 5.7
U72969-1|AAB48082.1| 516|Homo sapiens hepatocyte nuclear factor... 31 5.7
U72967-1|AAB48083.1| 408|Homo sapiens hepatocyte nuclear factor... 31 5.7
M84820-1|AAA60293.1| 533|Homo sapiens retinoid X receptor beta ... 31 5.7
EF591040-1|ABQ52204.1| 474|Homo sapiens hepatocyte nuclear fact... 31 5.7
CR542091-1|CAG46888.1| 408|Homo sapiens HNF4G protein. 31 5.7
BT007280-1|AAP35944.1| 533|Homo sapiens retinoid X receptor, be... 31 5.7
BC105011-1|AAI05012.1| 408|Homo sapiens HNF4G protein protein. 31 5.7
BC105009-1|AAI05010.1| 408|Homo sapiens HNF4G protein protein. 31 5.7
BC054009-1|AAH54009.1| 80|Homo sapiens HNF4G protein protein. 31 5.7
BC001167-1|AAH01167.1| 533|Homo sapiens retinoid X receptor, be... 31 5.7
AY680698-1|AAT91239.1| 395|Homo sapiens hepatocyte nuclear fact... 31 5.7
AY680697-1|AAT91238.1| 452|Homo sapiens hepatocyte nuclear fact... 31 5.7
AY680696-1|AAT91237.1| 442|Homo sapiens hepatocyte nuclear fact... 31 5.7
AL844527-9|CAI41836.2| 537|Homo sapiens retinoid X receptor, be... 31 5.7
AL844527-8|CAI41837.1| 533|Homo sapiens retinoid X receptor, be... 31 5.7
AL662824-21|CAI17612.2| 537|Homo sapiens retinoid X receptor, b... 31 5.7
AL662824-20|CAI17614.1| 533|Homo sapiens retinoid X receptor, b... 31 5.7
AL645940-7|CAI18064.2| 537|Homo sapiens retinoid X receptor, be... 31 5.7
AL645940-6|CAI18066.1| 533|Homo sapiens retinoid X receptor, be... 31 5.7
AL132772-10|CAI18863.1| 100|Homo sapiens hepatocyte nuclear fac... 31 5.7
AL132772-3|CAI18857.1| 467|Homo sapiens hepatocyte nuclear fact... 31 5.7
AL132772-2|CAC01303.1| 474|Homo sapiens hepatocyte nuclear fact... 31 5.7
AL132772-1|CAI18856.1| 417|Homo sapiens hepatocyte nuclear fact... 31 5.7
AL117382-6|CAI23113.1| 100|Homo sapiens hepatocyte nuclear fact... 31 5.7
AL031228-14|CAI95622.1| 482|Homo sapiens retinoid X receptor, b... 31 5.7
AL031228-13|CAA20239.1| 533|Homo sapiens retinoid X receptor, b... 31 5.7
AL031228-12|CAI95621.1| 262|Homo sapiens retinoid X receptor, b... 31 5.7
AJ250835-1|CAB60726.1| 381|Homo sapiens retinoic acid receptor ... 31 5.7
AF120161-1|AAD13794.1| 533|Homo sapiens retinoic X receptor bet... 31 5.7
AF065396-1|AAC18599.1| 533|Homo sapiens retinoic X receptor B p... 31 5.7
AB209244-1|BAD92481.1| 577|Homo sapiens retinoid X receptor, be... 31 5.7
AB020632-1|BAA74848.1| 553|Homo sapiens KIAA0825 protein protein. 31 7.5
X51417-1|CAA35779.1| 433|Homo sapiens protein ( Human mRNA for ... 30 9.9
U38480-1|AAA80681.1| 463|Homo sapiens retinoid X receptor-gamma... 30 9.9
CR456705-1|CAG32986.1| 463|Homo sapiens RXRG protein. 30 9.9
BC131517-1|AAI31518.1| 503|Homo sapiens ESRRB protein protein. 30 9.9
BC012063-1|AAH12063.1| 463|Homo sapiens retinoid X receptor, ga... 30 9.9
AY451390-1|AAS15572.1| 508|Homo sapiens estrogen receptor-relat... 30 9.9
AY451389-1|AAS15571.1| 433|Homo sapiens estrogen receptor-relat... 30 9.9
AL160058-2|CAC00596.1| 463|Homo sapiens retinoid X receptor, ga... 30 9.9
AF094517-1|AAC99409.1| 500|Homo sapiens nuclear receptor ERRB2 ... 30 9.9
AC016543-1|AAG29619.1| 262|Homo sapiens hERRB2 protein. 30 9.9
>U43923-1|AAB07814.1| 117|Homo sapiens SUPT4H protein.
Length = 117
Score = 193 bits (470), Expect = 8e-49
Identities = 79/114 (69%), Positives = 103/114 (90%)
Frame = +2
Query: 167 MSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGM 346
M++ETVPK+LR LRACL+CSL+KT DQFEY+GCDNCD +L+MK N++ VYDCTS++FDG+
Sbjct: 1 MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 347 IAVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTS 508
IA+M+PEDSWV KWQR+S F GVYA+SV+GRLP G++RE+KSRG+AY+ RDT+
Sbjct: 61 IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTA 114
>U38818-1|AAB18674.1| 117|Homo sapiens SUPT4H protein.
Length = 117
Score = 193 bits (470), Expect = 8e-49
Identities = 79/114 (69%), Positives = 103/114 (90%)
Frame = +2
Query: 167 MSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGM 346
M++ETVPK+LR LRACL+CSL+KT DQFEY+GCDNCD +L+MK N++ VYDCTS++FDG+
Sbjct: 1 MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 347 IAVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTS 508
IA+M+PEDSWV KWQR+S F GVYA+SV+GRLP G++RE+KSRG+AY+ RDT+
Sbjct: 61 IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTA 114
>U38817-1|AAB18675.1| 117|Homo sapiens SUPT4H protein.
Length = 117
Score = 193 bits (470), Expect = 8e-49
Identities = 79/114 (69%), Positives = 103/114 (90%)
Frame = +2
Query: 167 MSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGM 346
M++ETVPK+LR LRACL+CSL+KT DQFEY+GCDNCD +L+MK N++ VYDCTS++FDG+
Sbjct: 1 MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 347 IAVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTS 508
IA+M+PEDSWV KWQR+S F GVYA+SV+GRLP G++RE+KSRG+AY+ RDT+
Sbjct: 61 IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTA 114
>CR407663-1|CAG28591.1| 117|Homo sapiens SUPT4H1 protein.
Length = 117
Score = 193 bits (470), Expect = 8e-49
Identities = 79/114 (69%), Positives = 103/114 (90%)
Frame = +2
Query: 167 MSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGM 346
M++ETVPK+LR LRACL+CSL+KT DQFEY+GCDNCD +L+MK N++ VYDCTS++FDG+
Sbjct: 1 MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 347 IAVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTS 508
IA+M+PEDSWV KWQR+S F GVYA+SV+GRLP G++RE+KSRG+AY+ RDT+
Sbjct: 61 IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTA 114
>BC002802-1|AAH02802.1| 117|Homo sapiens suppressor of Ty 4 homolog
1 (S. cerevisiae) protein.
Length = 117
Score = 193 bits (470), Expect = 8e-49
Identities = 79/114 (69%), Positives = 103/114 (90%)
Frame = +2
Query: 167 MSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGM 346
M++ETVPK+LR LRACL+CSL+KT DQFEY+GCDNCD +L+MK N++ VYDCTS++FDG+
Sbjct: 1 MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 347 IAVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTS 508
IA+M+PEDSWV KWQR+S F GVYA+SV+GRLP G++RE+KSRG+AY+ RDT+
Sbjct: 61 IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTA 114
>AK129758-1|BAC85230.1| 135|Homo sapiens protein ( Homo sapiens
cDNA FLJ26247 fis, clone DMC01574. ).
Length = 135
Score = 169 bits (410), Expect = 2e-41
Identities = 72/115 (62%), Positives = 96/115 (83%)
Frame = +2
Query: 167 MSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGM 346
M++ETVPK+LR LRACL+CSL+KT DQFEY+GCDNCD +L+MK N++ VYDCTS++FDG+
Sbjct: 1 MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 347 IAVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRPRDTSQ 511
IA+M+PEDSWV KWQR+S F GVYA+SV+GRLP ++ +S Y PR++S+
Sbjct: 61 IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPHA--KDSRSNVNKYEPRESSE 113
>Z75048-1|CAA99340.1| 445|Homo sapiens homogentisate
1,2-dioxygenase protein.
Length = 445
Score = 32.3 bits (70), Expect = 2.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 517 LSLACVPWAIGNTSTLHFSYYTCWQPSRNRYCINS 413
LSLA W + + L +Y+ CW+P ++ + NS
Sbjct: 404 LSLAVTKWGLKASRCLDENYHKCWEPLKSHFTPNS 438
>U63008-1|AAB16836.1| 445|Homo sapiens homogentisate dioxygenase
protein.
Length = 445
Score = 32.3 bits (70), Expect = 2.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 517 LSLACVPWAIGNTSTLHFSYYTCWQPSRNRYCINS 413
LSLA W + + L +Y+ CW+P ++ + NS
Sbjct: 404 LSLAVTKWGLKASRCLDENYHKCWEPLKSHFTPNS 438
>BC071757-1|AAH71757.1| 445|Homo sapiens homogentisate
1,2-dioxygenase (homogentisate oxidase) protein.
Length = 445
Score = 32.3 bits (70), Expect = 2.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 517 LSLACVPWAIGNTSTLHFSYYTCWQPSRNRYCINS 413
LSLA W + + L +Y+ CW+P ++ + NS
Sbjct: 404 LSLAVTKWGLKASRCLDENYHKCWEPLKSHFTPNS 438
>AF045167-1|AAC02698.1| 445|Homo sapiens homogentisate
1,2-dioxygenase protein.
Length = 445
Score = 32.3 bits (70), Expect = 2.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 517 LSLACVPWAIGNTSTLHFSYYTCWQPSRNRYCINS 413
LSLA W + + L +Y+ CW+P ++ + NS
Sbjct: 404 LSLAVTKWGLKASRCLDENYHKCWEPLKSHFTPNS 438
>AF000573-1|AAC51650.1| 445|Homo sapiens homogentisate
1,2-dioxygenase protein.
Length = 445
Score = 32.3 bits (70), Expect = 2.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -3
Query: 517 LSLACVPWAIGNTSTLHFSYYTCWQPSRNRYCINS 413
LSLA W + + L +Y+ CW+P ++ + NS
Sbjct: 404 LSLAVTKWGLKASRCLDENYHKCWEPLKSHFTPNS 438
>Z49825-1|CAA89989.1| 504|Homo sapiens hepatocyte nuclear factor 4
alpha (HNF4alpha4) protein.
Length = 504
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 81 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 126
>X87872-1|CAA61135.1| 408|Homo sapiens Hepatocyte nuclear factor 4C
protein.
Length = 408
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 42 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 87
>X87871-1|CAA61134.1| 465|Homo sapiens Hepatocyte nuclear factor 4B
protein.
Length = 465
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 42 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 87
>X87870-1|CAA61133.1| 455|Homo sapiens Hepatocyte nuclear factor 4A
protein.
Length = 455
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 42 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 87
>X76930-1|CAA54248.1| 465|Homo sapiens hepatocyte nuclear factor 4
protein.
Length = 465
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 42 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 87
>X63522-1|CAA45087.1| 533|Homo sapiens retinoic acid X receptor b
protein.
Length = 533
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>U72969-1|AAB48082.1| 516|Homo sapiens hepatocyte nuclear factor
4-alpha protein.
Length = 516
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 93 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 138
>U72967-1|AAB48083.1| 408|Homo sapiens hepatocyte nuclear factor
4-alpha protein.
Length = 408
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 42 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 87
>M84820-1|AAA60293.1| 533|Homo sapiens retinoid X receptor beta
protein.
Length = 533
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>EF591040-1|ABQ52204.1| 474|Homo sapiens hepatocyte nuclear factor
4, alpha protein.
Length = 474
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 51 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 96
>CR542091-1|CAG46888.1| 408|Homo sapiens HNF4G protein.
Length = 408
Score = 31.1 bits (67), Expect = 5.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
C +C T + CD C F R K +VY C
Sbjct: 12 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSC 48
>BT007280-1|AAP35944.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>BC105011-1|AAI05012.1| 408|Homo sapiens HNF4G protein protein.
Length = 408
Score = 31.1 bits (67), Expect = 5.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
C +C T + CD C F R K +VY C
Sbjct: 12 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSC 48
>BC105009-1|AAI05010.1| 408|Homo sapiens HNF4G protein protein.
Length = 408
Score = 31.1 bits (67), Expect = 5.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
C +C T + CD C F R K +VY C
Sbjct: 12 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSC 48
>BC054009-1|AAH54009.1| 80|Homo sapiens HNF4G protein protein.
Length = 80
Score = 31.1 bits (67), Expect = 5.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
C +C T + CD C F R K +VY C
Sbjct: 12 CAICGDRATGKHYGASSCDGCKGFFRRSIRKSHVYSC 48
>BC001167-1|AAH01167.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>AY680698-1|AAT91239.1| 395|Homo sapiens hepatocyte nuclear factor
4 alpha, transcript variant 9 protein.
Length = 395
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 29 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 74
>AY680697-1|AAT91238.1| 452|Homo sapiens hepatocyte nuclear factor
4 alpha, transcript variant 8 protein.
Length = 452
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 29 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 74
>AY680696-1|AAT91237.1| 442|Homo sapiens hepatocyte nuclear factor
4 alpha, transcript variant 7 protein.
Length = 442
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 29 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 74
>AL844527-9|CAI41836.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>AL844527-8|CAI41837.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>AL662824-21|CAI17612.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>AL662824-20|CAI17614.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>AL645940-7|CAI18064.2| 537|Homo sapiens retinoid X receptor, beta
protein.
Length = 537
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>AL645940-6|CAI18066.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>AL132772-10|CAI18863.1| 100|Homo sapiens hepatocyte nuclear factor
4, alpha protein.
Length = 100
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 29 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 74
>AL132772-3|CAI18857.1| 467|Homo sapiens hepatocyte nuclear factor
4, alpha protein.
Length = 467
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 44 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 89
>AL132772-2|CAC01303.1| 474|Homo sapiens hepatocyte nuclear factor
4, alpha protein.
Length = 474
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 51 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 96
>AL132772-1|CAI18856.1| 417|Homo sapiens hepatocyte nuclear factor
4, alpha protein.
Length = 417
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 51 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 96
>AL117382-6|CAI23113.1| 100|Homo sapiens hepatocyte nuclear factor
4, alpha protein.
Length = 100
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/46 (28%), Positives = 18/46 (39%)
Frame = +2
Query: 185 PKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
P L C +C T + CD C F R K+++Y C
Sbjct: 29 PNSLGVSALCAICGDRATGKHYGASSCDGCKGFFRRSVRKNHMYSC 74
>AL031228-14|CAI95622.1| 482|Homo sapiens retinoid X receptor, beta
protein.
Length = 482
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 150 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 208
Query: 380 CKWQR 394
C++Q+
Sbjct: 209 CRYQK 213
>AL031228-13|CAA20239.1| 533|Homo sapiens retinoid X receptor, beta
protein.
Length = 533
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>AL031228-12|CAI95621.1| 262|Homo sapiens retinoid X receptor, beta
protein.
Length = 262
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 172 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 230
Query: 380 CKWQR 394
C++Q+
Sbjct: 231 CRYQK 235
>AJ250835-1|CAB60726.1| 381|Homo sapiens retinoic acid receptor
protein.
Length = 381
Score = 31.1 bits (67), Expect = 5.7
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = +2
Query: 164 IMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
+ S + P R + C VC+ + + C+ C F R + K+ VY C
Sbjct: 1 VPSSPSPPPPPRVYKPCFVCNDKSSGYHYGVSSCEGCKGFFRRSTQKNMVYTC 53
>AF120161-1|AAD13794.1| 533|Homo sapiens retinoic X receptor beta
protein.
Length = 533
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>AF065396-1|AAC18599.1| 533|Homo sapiens retinoic X receptor B
protein.
Length = 533
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 201 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 259
Query: 380 CKWQR 394
C++Q+
Sbjct: 260 CRYQK 264
>AB209244-1|BAD92481.1| 577|Homo sapiens retinoid X receptor, beta
variant protein.
Length = 577
Score = 31.1 bits (67), Expect = 5.7
Identities = 15/65 (23%), Positives = 24/65 (36%)
Frame = +2
Query: 200 GLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWV 379
G R C +C + + C+ C F + KD Y C N D +
Sbjct: 241 GKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNK-DCTVDKRQRNRCQY 299
Query: 380 CKWQR 394
C++Q+
Sbjct: 300 CRYQK 304
>AB020632-1|BAA74848.1| 553|Homo sapiens KIAA0825 protein protein.
Length = 553
Score = 30.7 bits (66), Expect = 7.5
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 386 ICKPSCLQDSLLQSFHQSYYLCNHRHYLCYFSCEEIHHNCHSLHIQI 246
+C S LQD+ +S H Y + C FS + H+ C SLH +
Sbjct: 217 VCATSILQDA--ESHHWDDYKAFYEGERCSFSIQMWHYFCWSLHYDL 261
>X51417-1|CAA35779.1| 433|Homo sapiens protein ( Human mRNA for
steroid hormone receptor hERR2. ).
Length = 433
Score = 30.3 bits (65), Expect = 9.9
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +2
Query: 152 IRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 331
I+C M + +PK L CLVC I + + C+ C F + + Y C +
Sbjct: 89 IKCEYM-LNAIPKRL-----CLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPAT 142
Query: 332 N 334
N
Sbjct: 143 N 143
>U38480-1|AAA80681.1| 463|Homo sapiens retinoid X receptor-gamma
protein.
Length = 463
Score = 30.3 bits (65), Expect = 9.9
Identities = 14/61 (22%), Positives = 24/61 (39%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQ 391
C +C + + C+ C F + KD +Y C N D +I C++Q
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNK-DCLIDKRQRNRCQYCRYQ 197
Query: 392 R 394
+
Sbjct: 198 K 198
>CR456705-1|CAG32986.1| 463|Homo sapiens RXRG protein.
Length = 463
Score = 30.3 bits (65), Expect = 9.9
Identities = 14/61 (22%), Positives = 24/61 (39%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQ 391
C +C + + C+ C F + KD +Y C N D +I C++Q
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNK-DCLIDKRQRNRCQYCRYQ 197
Query: 392 R 394
+
Sbjct: 198 K 198
>BC131517-1|AAI31518.1| 503|Homo sapiens ESRRB protein protein.
Length = 503
Score = 30.3 bits (65), Expect = 9.9
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +2
Query: 152 IRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 331
I+C M + +PK L CLVC I + + C+ C F + + Y C +
Sbjct: 89 IKCEYM-LNAIPKRL-----CLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPAT 142
Query: 332 N 334
N
Sbjct: 143 N 143
>BC012063-1|AAH12063.1| 463|Homo sapiens retinoid X receptor, gamma
protein.
Length = 463
Score = 30.3 bits (65), Expect = 9.9
Identities = 14/61 (22%), Positives = 24/61 (39%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQ 391
C +C + + C+ C F + KD +Y C N D +I C++Q
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNK-DCLIDKRQRNRCQYCRYQ 197
Query: 392 R 394
+
Sbjct: 198 K 198
>AY451390-1|AAS15572.1| 508|Homo sapiens estrogen receptor-related
receptor beta2-delta-10 protein.
Length = 508
Score = 30.3 bits (65), Expect = 9.9
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +2
Query: 152 IRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 331
I+C M + +PK L CLVC I + + C+ C F + + Y C +
Sbjct: 89 IKCEYM-LNAIPKRL-----CLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPAT 142
Query: 332 N 334
N
Sbjct: 143 N 143
>AY451389-1|AAS15571.1| 433|Homo sapiens estrogen receptor-related
receptor beta short form protein.
Length = 433
Score = 30.3 bits (65), Expect = 9.9
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +2
Query: 152 IRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 331
I+C M + +PK L CLVC I + + C+ C F + + Y C +
Sbjct: 89 IKCEYM-LNAIPKRL-----CLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPAT 142
Query: 332 N 334
N
Sbjct: 143 N 143
>AL160058-2|CAC00596.1| 463|Homo sapiens retinoid X receptor, gamma
protein.
Length = 463
Score = 30.3 bits (65), Expect = 9.9
Identities = 14/61 (22%), Positives = 24/61 (39%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQ 391
C +C + + C+ C F + KD +Y C N D +I C++Q
Sbjct: 139 CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNK-DCLIDKRQRNRCQYCRYQ 197
Query: 392 R 394
+
Sbjct: 198 K 198
>AF094517-1|AAC99409.1| 500|Homo sapiens nuclear receptor ERRB2
protein.
Length = 500
Score = 30.3 bits (65), Expect = 9.9
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +2
Query: 152 IRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 331
I+C M + +PK L CLVC I + + C+ C F + + Y C +
Sbjct: 89 IKCEYM-LNAIPKRL-----CLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPAT 142
Query: 332 N 334
N
Sbjct: 143 N 143
>AC016543-1|AAG29619.1| 262|Homo sapiens hERRB2 protein.
Length = 262
Score = 30.3 bits (65), Expect = 9.9
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +2
Query: 152 IRCSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 331
I+C M + +PK L CLVC I + + C+ C F + + Y C +
Sbjct: 89 IKCEYM-LNAIPKRL-----CLVCGDIASGYHYGVASCEACKAFFKRTIQGNIEYSCPAT 142
Query: 332 N 334
N
Sbjct: 143 N 143
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,119,347
Number of Sequences: 237096
Number of extensions: 1724111
Number of successful extensions: 8358
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 8173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8356
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11548247776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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