Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_G16
(897 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099916-1|AAC68775.1| 120|Caenorhabditis elegans Spt transcrip... 148 6e-36
U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical pr... 34 0.12
AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical ... 33 0.28
U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone... 31 0.85
AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear recep... 31 0.85
U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein. 30 2.0
AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear recep... 30 2.0
AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear recep... 30 2.0
AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormo... 30 2.0
Z75554-2|CAA99954.1| 526|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z46787-22|CAO78708.1| 666|Caenorhabditis elegans Hypothetical p... 29 3.4
Z46787-21|CAO78707.1| 714|Caenorhabditis elegans Hypothetical p... 29 3.4
Z46787-20|CAC42257.1| 791|Caenorhabditis elegans Hypothetical p... 29 3.4
Z46787-19|CAO78706.1| 801|Caenorhabditis elegans Hypothetical p... 29 3.4
Z46787-18|CAO78705.1| 805|Caenorhabditis elegans Hypothetical p... 29 3.4
Z46787-17|CAO78704.1| 863|Caenorhabditis elegans Hypothetical p... 29 3.4
Z46787-16|CAO78703.1| 821|Caenorhabditis elegans Hypothetical p... 29 3.4
Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical p... 29 3.4
Z35596-8|CAO78718.1| 666|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z35596-7|CAO78717.1| 714|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z35596-6|CAA84644.2| 791|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z35596-5|CAO78716.1| 801|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z35596-4|CAO78715.1| 805|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z35596-3|CAO78714.1| 863|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z35596-2|CAO78713.1| 821|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF257518-1|AAF68999.1| 791|Caenorhabditis elegans HERG-like pot... 29 3.4
Z83233-10|CAB05768.2| 364|Caenorhabditis elegans Hypothetical p... 29 4.5
Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical p... 29 4.5
AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical ... 29 4.5
AF273799-1|AAG15148.1| 365|Caenorhabditis elegans nuclear recep... 29 4.5
AF273798-1|AAG15147.1| 366|Caenorhabditis elegans nuclear recep... 29 4.5
Z54281-4|CAA91049.1| 199|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical pr... 29 6.0
U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormon... 29 6.0
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 29 6.0
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 29 6.0
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 29 6.0
AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical ... 29 6.0
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ... 29 6.0
Z82259-8|CAC70072.3| 410|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z81575-10|CAB04640.1| 338|Caenorhabditis elegans Hypothetical p... 28 7.9
>AF099916-1|AAC68775.1| 120|Caenorhabditis elegans Spt
transcription factor familyprotein 4 protein.
Length = 120
Score = 148 bits (358), Expect = 6e-36
Identities = 63/116 (54%), Positives = 89/116 (76%), Gaps = 2/116 (1%)
Frame = +2
Query: 179 TVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVM 358
+VP +LR LRACL+CSL+K+ + F+ EGC+NC++ L +K +++ VYDCTS N+DGMIA M
Sbjct: 4 SVPADLRNLRACLLCSLVKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMIAAM 63
Query: 359 NPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSRGIAYRP--RDTSQR*K 520
+ +SWVCKWQ++ R KG+YAISVSG LP ++ E+KS G+ Y+P RD S + K
Sbjct: 64 SNNESWVCKWQKMQRKVKGMYAISVSGVLPNNIVSELKSLGVRYKPNQRDYSTQFK 119
>U97003-7|AAB52274.1| 357|Caenorhabditis elegans Hypothetical
protein F47C10.4 protein.
Length = 357
Score = 34.3 bits (75), Expect = 0.12
Identities = 28/106 (26%), Positives = 40/106 (37%)
Frame = +2
Query: 161 SIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 340
S S E L G +AC+VC F CD C F R + Y C N
Sbjct: 10 SSSSPEMFALNLTGQKACVVCKRPANCYNFGVMSCDACKMFFRRTMLLNVQYVCRRKN-- 67
Query: 341 GMIAVMNPEDSWVCKWQRISRFCKGVYAISVSGRLPAGVIREMKSR 478
+DS+ C R C+ V + V +L + E+K++
Sbjct: 68 -----QCFDDSFSCLKTPYCRACRLVQCVKVGMKLNLSAMLEVKNQ 108
>AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical
protein Y51A2D.5 protein.
Length = 613
Score = 33.1 bits (72), Expect = 0.28
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 424 CINSFTKSTNSLPFANPAVFRIHYCNHSIKVITCAIIDIIFVTF 293
C N KS +S P A V++ H+C S ++ ++ + +TF
Sbjct: 443 CTNGLDKSNSSFPNATSYVWQKHHCTTSYTILPIVMMGVYLLTF 486
>U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 10 protein.
Length = 395
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
CLVCS I T + C+ C F R K+ + C
Sbjct: 18 CLVCSDISTGYHYGVPSCNGCKTFFRRTIMKNQTFSC 54
>AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear receptor
NHR-10 protein.
Length = 395
Score = 31.5 bits (68), Expect = 0.85
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDC 322
CLVCS I T + C+ C F R K+ + C
Sbjct: 18 CLVCSDISTGYHYGVPSCNGCKTFFRRTIMKNQTFSC 54
>U37424-1|AAA80355.1| 359|Caenorhabditis elegans NHR-2 protein.
Length = 359
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 325
C+VC T + + C+ C F R +K+ Y CT
Sbjct: 105 CMVCGDNSTGYHYGVQSCEGCKGFFRRSVHKNIAYVCT 142
>AF332201-1|AAK17972.1| 474|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 474
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 325
C+VC T + + C+ C F R +K+ Y CT
Sbjct: 220 CMVCGDNSTGYHYGVQSCEGCKGFFRRSVHKNIAYVCT 257
>AF332200-1|AAK17971.1| 453|Caenorhabditis elegans nuclear receptor
NHR-2 protein.
Length = 453
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 325
C+VC T + + C+ C F R +K+ Y CT
Sbjct: 216 CMVCGDNSTGYHYGVQSCEGCKGFFRRSVHKNIAYVCT 253
>AF000195-4|AAC24271.2| 359|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 2 protein.
Length = 359
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCT 325
C+VC T + + C+ C F R +K+ Y CT
Sbjct: 105 CMVCGDNSTGYHYGVQSCEGCKGFFRRSVHKNIAYVCT 142
>Z75554-2|CAA99954.1| 526|Caenorhabditis elegans Hypothetical
protein ZC455.3 protein.
Length = 526
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -3
Query: 412 FTKSTNSLPFANPAVFRIHYCNHSIKVITCAIIDIIFVTFHAKKFITIVTAFIFKL 245
F + N P+AN F YC S+ ++ C I + V F F +V + I KL
Sbjct: 468 FAQVDNLEPYANKYNFIEFYCLDSLALVVCTISVVALVMFKILSF--VVNSVIEKL 521
>Z46787-22|CAO78708.1| 666|Caenorhabditis elegans Hypothetical
protein C30D11.1h protein.
Length = 666
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z46787-21|CAO78707.1| 714|Caenorhabditis elegans Hypothetical
protein C30D11.1g protein.
Length = 714
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z46787-20|CAC42257.1| 791|Caenorhabditis elegans Hypothetical
protein C30D11.1f protein.
Length = 791
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z46787-19|CAO78706.1| 801|Caenorhabditis elegans Hypothetical
protein C30D11.1e protein.
Length = 801
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 250 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 307
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 308 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 339
>Z46787-18|CAO78705.1| 805|Caenorhabditis elegans Hypothetical
protein C30D11.1d protein.
Length = 805
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 254 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 311
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 312 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 343
>Z46787-17|CAO78704.1| 863|Caenorhabditis elegans Hypothetical
protein C30D11.1c protein.
Length = 863
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 312 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 369
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 370 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 401
>Z46787-16|CAO78703.1| 821|Caenorhabditis elegans Hypothetical
protein C30D11.1b protein.
Length = 821
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 270 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 327
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 328 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 359
>Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 278 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 335
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 336 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 367
>Z35596-8|CAO78718.1| 666|Caenorhabditis elegans Hypothetical
protein C30D11.1h protein.
Length = 666
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z35596-7|CAO78717.1| 714|Caenorhabditis elegans Hypothetical
protein C30D11.1g protein.
Length = 714
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z35596-6|CAA84644.2| 791|Caenorhabditis elegans Hypothetical
protein C30D11.1f protein.
Length = 791
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z35596-5|CAO78716.1| 801|Caenorhabditis elegans Hypothetical
protein C30D11.1e protein.
Length = 801
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 250 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 307
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 308 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 339
>Z35596-4|CAO78715.1| 805|Caenorhabditis elegans Hypothetical
protein C30D11.1d protein.
Length = 805
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 254 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 311
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 312 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 343
>Z35596-3|CAO78714.1| 863|Caenorhabditis elegans Hypothetical
protein C30D11.1c protein.
Length = 863
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 312 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 369
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 370 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 401
>Z35596-2|CAO78713.1| 821|Caenorhabditis elegans Hypothetical
protein C30D11.1b protein.
Length = 821
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 270 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 327
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 328 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 359
>Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 278 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 335
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 336 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 367
>AF257518-1|AAF68999.1| 791|Caenorhabditis elegans HERG-like
potassium channel protein.
Length = 791
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -3
Query: 511 LACVPWAIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFANPAVFRIHYCN--HSI 338
LAC+ +AIG+ H Y W ++ +T + ++P P + + + ++
Sbjct: 240 LACIWYAIGSAELSHKEY--TWLHQLSKQLAQPYTSTNGTIPTGGPTLKSRYVTSLYFTL 297
Query: 337 KVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
IT + T ++K TI+ + L+
Sbjct: 298 STITSIGFGNVSATTDSEKIFTIIMMILGSLM 329
>Z83233-10|CAB05768.2| 364|Caenorhabditis elegans Hypothetical
protein K06B4.11 protein.
Length = 364
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 331
CL+C + F C C F R + V+DC N
Sbjct: 23 CLICCEVADGHHFGAAACRACAAFFRRTVQLNKVHDCPKN 62
>Z81571-11|CAC35914.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/76 (23%), Positives = 30/76 (39%)
Frame = +2
Query: 251 EYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQRISRFCKGVYAIS 430
E++G DN + KS + + S DG M + + + Y I
Sbjct: 1075 EFQGIDNAMKISEEKSEQYKIEVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQ 1134
Query: 431 VSGRLPAGVIREMKSR 478
G + +G I EM++R
Sbjct: 1135 SEGEIMSGCIIEMRNR 1150
>AL132848-7|CAC35915.1| 1579|Caenorhabditis elegans Hypothetical
protein M01G12.12 protein.
Length = 1579
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/76 (23%), Positives = 30/76 (39%)
Frame = +2
Query: 251 EYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCKWQRISRFCKGVYAIS 430
E++G DN + KS + + S DG M + + + Y I
Sbjct: 1075 EFQGIDNAMKISEEKSEQYKIEVDESIRVDGFEEYMEDAKKQLASYNGQLKSTMDTYGIQ 1134
Query: 431 VSGRLPAGVIREMKSR 478
G + +G I EM++R
Sbjct: 1135 SEGEIMSGCIIEMRNR 1150
>AF273799-1|AAG15148.1| 365|Caenorhabditis elegans nuclear receptor
NHR-53 protein.
Length = 365
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 331
CL+C + F C C F R + V+DC N
Sbjct: 24 CLICCEVADGHHFGAAACRACAAFFRRTVQLNKVHDCPKN 63
>AF273798-1|AAG15147.1| 366|Caenorhabditis elegans nuclear receptor
NHR-53 protein.
Length = 366
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 331
CL+C + F C C F R + V+DC N
Sbjct: 25 CLICCEVADGHHFGAAACRACAAFFRRTVQLNKVHDCPKN 64
>Z54281-4|CAA91049.1| 199|Caenorhabditis elegans Hypothetical
protein F46C5.7 protein.
Length = 199
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -3
Query: 403 STNSLPFANPAVFRIHYCN--HSIKVITCAIIDIIFVTFHAKKFITIVTAFIFKLV 242
+++ +PF F ++ C SI ++ CA ++IF F+ I+ +F+F L+
Sbjct: 19 NSSFMPFWRRTAF-VYKCELAFSILILFCAFAELIFYDCFVIFFLMIIASFVFVLL 73
>Z47067-2|CAA87329.1| 498|Caenorhabditis elegans Hypothetical
protein C43C3.2 protein.
Length = 498
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = -3
Query: 343 SIKVITCAIIDIIFVTFHAKKFITIVTAFIFKLVKCLYQRADQACSQPA*FFWHRFYGHY 164
+I V AI + +FH + + ++ L + LYQ S P F + YG +
Sbjct: 313 TIPVGHIAIYTLAICSFHFICWTPYWISILYSLYEELYQDTKSTASPPTYAFIYFMYGVH 372
Query: 163 TAPYV 149
PY+
Sbjct: 373 ALPYI 377
>U53333-12|AAA96165.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 78 protein.
Length = 387
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/58 (27%), Positives = 20/58 (34%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFDGMIAVMNPEDSWVCK 385
C +C + F C C F R D YDC + D +N E CK
Sbjct: 3 CAICDSVALSLHFGAPSCKACAAFFRRTVALDITYDCITGTLD---CEVNFERRMACK 57
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 340
CL+CS T FE + C C F R + C + D
Sbjct: 12 CLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCITGRDD 54
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 340
CL+CS T FE + C C F R + C + D
Sbjct: 30 CLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCITGRDD 72
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/43 (30%), Positives = 17/43 (39%)
Frame = +2
Query: 212 CLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSNNFD 340
CL+CS T FE + C C F R + C + D
Sbjct: 12 CLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCITGRDD 54
>AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical
protein C09H5.2b protein.
Length = 1039
Score = 28.7 bits (61), Expect = 6.0
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = +2
Query: 158 CSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCD----NCDEFLRMKSN----KDNV 313
CS ++I+ VP EL G R + + ++ F EGC C +F ++ K N
Sbjct: 559 CSTINIDGVPMELNGKR---MDDFNEAYETFGDEGCRVIGFACKKFRAPATSTFSIKSNT 615
Query: 314 YDCTSNNFDGMIAVMNP 364
+ +F GM A+M+P
Sbjct: 616 IPMDNWDFLGMSAIMDP 632
>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
protein C09H5.2a protein.
Length = 1054
Score = 28.7 bits (61), Expect = 6.0
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = +2
Query: 158 CSIMSIETVPKELRGLRACLVCSLIKTFDQFEYEGCD----NCDEFLRMKSN----KDNV 313
CS ++I+ VP EL G R + + ++ F EGC C +F ++ K N
Sbjct: 559 CSTINIDGVPMELNGKR---MDDFNEAYETFGDEGCRVIGFACKKFRAPATSTFSIKSNT 615
Query: 314 YDCTSNNFDGMIAVMNP 364
+ +F GM A+M+P
Sbjct: 616 IPMDNWDFLGMSAIMDP 632
>Z82259-8|CAC70072.3| 410|Caenorhabditis elegans Hypothetical
protein C28D4.9 protein.
Length = 410
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +2
Query: 206 RACLVCSLIKTFDQFEYEGCDNCDEFLRMKSNKDNVYDCTSN 331
R CLVC K + C+ C F R + Y C +N
Sbjct: 13 RRCLVCGDDKASRHYGTVACNGCKGFFRRSVWEKRTYFCIAN 54
>Z81575-10|CAB04640.1| 338|Caenorhabditis elegans Hypothetical
protein R08H2.13 protein.
Length = 338
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 493 AIGNTSTLHFSYYTCWQPSRNRYCINSFTKSTNSLPFAN 377
++ N + + Y C++P YCI SF K S+ N
Sbjct: 286 SLANVVPIAVAIYPCFEPLAAMYCIKSFQKRIFSILTCN 324
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,708,610
Number of Sequences: 27780
Number of extensions: 297779
Number of successful extensions: 1060
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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