Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_G14
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 188 6e-48
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 142 3e-34
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 90 2e-18
12_02_1110 + 26154024-26154314,26154400-26154944,26155023-261551... 30 2.6
06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119 29 3.4
09_02_0589 + 10969195-10969325,10971135-10971607,10971894-109720... 29 6.0
05_05_0392 + 24629528-24630442 28 7.9
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 188 bits (457), Expect = 6e-48
Identities = 93/185 (50%), Positives = 115/185 (62%)
Frame = +3
Query: 216 KAPRIEVFLLNRLFTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADETLLHEY 395
+AP + + + +D KVNLGVGAYR E GKP VL +VR+ E+ L + + + EY
Sbjct: 12 QAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINNPSRVKEY 71
Query: 396 LPVLGLEQFCNASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYY 575
LP+ GL F S ++ G DSPAI + VQ LSGTG LRVG EFL +H T Y
Sbjct: 72 LPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLARHYHERTIYI 131
Query: 576 STPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPENAVILLHACAHNP 755
PTW NH VF +G T RSYRY+D TRG+DF G +EDL SAP A++LLHACAHNP
Sbjct: 132 PQPTWGNHPKVFTLAGLT-VRSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLHACAHNP 190
Query: 756 TXHRP 770
T P
Sbjct: 191 TGVDP 195
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 142 bits (344), Expect = 3e-34
Identities = 70/172 (40%), Positives = 106/172 (61%)
Frame = +3
Query: 255 FTEDTFQNKVNLGVGAYRDENGKPWVLPIVRKMEKQLAADETLLHEYLPVLGLEQFCNAS 434
F D +KVN+GVGAYRD++GKP VL VR+ E+++A + EYLP+ G + S
Sbjct: 51 FLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERRIAGSMNM--EYLPMGGSIKMIEES 108
Query: 435 VAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFV 614
+ + GE+ I + VQ LSGTG R+ A+F + L Y TPTW NHH ++
Sbjct: 109 LKLAYGENCEFIKDKRIAAVQALSGTGACRLFADFQKRFLPDSQIYIPTPTWANHHNIWR 168
Query: 615 NSGFTKPRSYRYWDAKTRGIDFDGFIEDLKSAPENAVILLHACAHNPTXHRP 770
++ + +++ Y+ ++RG+DF G ++D+K+AP+ + LLHACAHNPT P
Sbjct: 169 DAQVPQ-KTFTYYHPESRGLDFAGLMDDIKNAPDGSFFLLHACAHNPTGVDP 219
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 89.8 bits (213), Expect = 2e-18
Identities = 39/90 (43%), Positives = 58/90 (64%)
Frame = +3
Query: 501 LSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDF 680
LSGTG R+ A+F + L Y TPTW NHH ++ ++ + R++ Y+ ++RG+DF
Sbjct: 68 LSGTGACRLFADFQRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQ-RTFTYYHPESRGLDF 126
Query: 681 DGFIEDLKSAPENAVILLHACAHNPTXHRP 770
G ++D+K+AP + LLHACAHNPT P
Sbjct: 127 AGLMDDIKNAPNGSFFLLHACAHNPTGVDP 156
>12_02_1110 +
26154024-26154314,26154400-26154944,26155023-26155109,
26155237-26155293,26155369-26155607,26155715-26155833,
26155945-26156031,26156117-26156194
Length = 500
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 469 MAGLSSPRSIATDALQNCSRPNTGRYSCSKVSSAASCFSILRT-MGSTHGLPFSSLY 302
M GLS SI PN R+S V +A+ FSIL T + P S+LY
Sbjct: 319 MLGLSYAASIRVGNELGAGHPNVARFSVFVVITASVAFSILATILVLVLRYPLSTLY 375
>06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119
Length = 393
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 492 VQVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVN 617
VQ L +GG+++GA LN + + F+ T T + VF+N
Sbjct: 353 VQALEASGGVKIGAG-LNVAYQREVFFIRTSTSNQIYAVFLN 393
>09_02_0589 +
10969195-10969325,10971135-10971607,10971894-10972032,
10972645-10972722,10972886-10973055,10973199-10973467,
10973655-10973781,10973964-10974035,10975084-10975273,
10975480-10975879
Length = 682
Score = 28.7 bits (61), Expect = 6.0
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Frame = +3
Query: 426 NASVAMLLGEDSPAIAAGKAFGVQVLSGTGGLRVGAEFL--NKHL--KYDTFY----YST 581
+ + A+ GE P +A G G + +G + +G + +++ +YD F+ YS+
Sbjct: 2 SGAAAIATGEGGPLVAVGLGGGNDLHNGDAAVVLGKTWCWASRYPGDQYDRFWWQLGYSS 61
Query: 582 PTWEN 596
PTW+N
Sbjct: 62 PTWKN 66
>05_05_0392 + 24629528-24630442
Length = 304
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = -3
Query: 535 SAPTRRPPVPDKTCTPKAFPAAMAGLSSPRSIAT 434
S P R+PPVP + C +A P +SP S T
Sbjct: 217 SGPQRKPPVPPRPC-GRASPRRAQETNSPASSTT 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,723,349
Number of Sequences: 37544
Number of extensions: 471525
Number of successful extensions: 1462
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1458
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -