Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_G10
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 158 8e-40
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 158 8e-40
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 158 8e-40
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 64 2e-11
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 26 6.0
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 7.9
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 7.9
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 26 7.9
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 158 bits (384), Expect = 8e-40
Identities = 83/104 (79%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Frame = +3
Query: 300 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 479
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 480 LLIRKLPFQRLVREIAQDSK--LICVSSLXPSELSRXQAXLISL 605
LLIRKLPFQRLVREIAQD K L SS + +A L+SL
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSL 104
Score = 59.7 bits (138), Expect = 5e-10
Identities = 29/35 (82%), Positives = 29/35 (82%)
Frame = +2
Query: 533 FKTDLRFQSXAIGALQXASXAYLVGLFEDPNLCAI 637
FKTDLRFQS AIGALQ A AYLV LFED NLCAI
Sbjct: 79 FKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAI 113
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 158 bits (384), Expect = 8e-40
Identities = 83/104 (79%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Frame = +3
Query: 300 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 479
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 480 LLIRKLPFQRLVREIAQDSK--LICVSSLXPSELSRXQAXLISL 605
LLIRKLPFQRLVREIAQD K L SS + +A L+SL
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSL 104
Score = 59.7 bits (138), Expect = 5e-10
Identities = 29/35 (82%), Positives = 29/35 (82%)
Frame = +2
Query: 533 FKTDLRFQSXAIGALQXASXAYLVGLFEDPNLCAI 637
FKTDLRFQS AIGALQ A AYLV LFED NLCAI
Sbjct: 79 FKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAI 113
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 158 bits (384), Expect = 8e-40
Identities = 83/104 (79%), Positives = 89/104 (85%), Gaps = 2/104 (1%)
Frame = +3
Query: 300 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 479
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 480 LLIRKLPFQRLVREIAQDSK--LICVSSLXPSELSRXQAXLISL 605
LLIRKLPFQRLVREIAQD K L SS + +A L+SL
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSL 104
Score = 59.7 bits (138), Expect = 5e-10
Identities = 29/35 (82%), Positives = 29/35 (82%)
Frame = +2
Query: 533 FKTDLRFQSXAIGALQXASXAYLVGLFEDPNLCAI 637
FKTDLRFQS AIGALQ A AYLV LFED NLCAI
Sbjct: 79 FKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAI 113
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 64.5 bits (150), Expect = 2e-11
Identities = 32/57 (56%), Positives = 44/57 (77%), Gaps = 4/57 (7%)
Frame = +3
Query: 375 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQD 533
A+KS + G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSE 58
Score = 44.0 bits (99), Expect = 3e-05
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Frame = +2
Query: 527 SGFKTD--LRFQSXAIGALQXASXAYLVGLFEDPNLCAI 637
+ F TD LR+QS A+ LQ A+ A+LV LFED NLCAI
Sbjct: 61 ANFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAI 99
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 295 KQWLVLNKQPVNLLEVKLRVNNLLQ 369
K++L L K PV L++ K N+L+
Sbjct: 12 KEYLALQKNPVELVDAKPATENILE 36
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 405 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIA 527
+ + HR + +L E + +++ S LLI P Q +RE+A
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELA 548
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 441 ALREIRRYQKSTELLIRKLPFQR 509
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 501 FQRLVREIAQDSKLICVSSLXPSELSRXQAXLISLACSKT 620
F L + +D +L+C S+ EL + + CS+T
Sbjct: 497 FNTLSNGVWKDDRLVCRESVEAKELPKLNPVWVRANCSRT 536
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,284
Number of Sequences: 5004
Number of extensions: 49773
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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