Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G09
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.23 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.93 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.93 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 691 PPXPPRGXPPKXLXXPPXGPPKKXP 765
           P  P RG PP     PP G P   P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 25.0 bits (52), Expect = 0.93
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 185 PPNPPXXXXPXPPPGPP 235
           PPNP     P  PPG P
Sbjct: 39  PPNPSQGPPPGGPPGAP 55



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +3

Query: 738 PXGXPQKXPXXXPXGHPPXNPXGSPXXLPXGRGGXPP 848
           P   P + P     G PP    G P   P G  G PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPP---PGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +2

Query: 653 PNPPPXXNXQXXXPPXPPGEXPPKXXKXPXGXPPKXPP 766
           P P P  +     P    G  P      P G PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQR--GSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/38 (28%), Positives = 12/38 (31%)
 Frame = +2

Query: 653 PNPPPXXNXQXXXPPXPPGEXPPKXXKXPXGXPPKXPP 766
           P P P  + Q      PP          P G PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/26 (42%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
 Frame = +3

Query: 162 PXXPPPPXPPTPPXXGXP-XPPPAPP 236
           P  P    PP P     P  PP APP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/24 (41%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
 Frame = +3

Query: 162 PXXPPPPXPPT-PPXXGXPXPPPA 230
           P    PP P   PP  G P  PP+
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPS 57


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 225  GGGXGXXXXGGLGGXGG 175
            GGG      GGLGG GG
Sbjct: 1705 GGGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 225  GGGXGXXXXGGLGGXGG 175
            GGG      GGLGG GG
Sbjct: 1701 GGGGSLAGLGGLGGLGG 1717


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +3

Query: 198  PXXGXPXPPPAPP 236
            P  G P PPP PP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 21.4 bits (43), Expect(2) = 1.6
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 407  KPPPPPP 387
            +PPPPPP
Sbjct: 1858 EPPPPPP 1864



 Score = 20.6 bits (41), Expect(2) = 1.6
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -3

Query: 446  PXPPPPP 426
            P PPPPP
Sbjct: 1857 PEPPPPP 1863


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 410  KKPPPPPPXP 381
            ++PPPPPP P
Sbjct: 1353 QQPPPPPPPP 1362



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 177  PPXPPTPPXXG 209
            PP PP PP  G
Sbjct: 1355 PPPPPPPPSSG 1365


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 407 KPPPPPPXPXXXXP 366
           KP PPPP P    P
Sbjct: 340 KPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 171 PPPPXPPTPP 200
           PP P PP PP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 463 PPPPPXXXGP 492
           PPPPP   GP
Sbjct: 344 PPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 192 TPPXXGXPXPPPA 230
           TPP    P PPP+
Sbjct: 337 TPPKPAPPPPPPS 349



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 161 PPKXXPPXPP 190
           PPK  PP PP
Sbjct: 338 PPKPAPPPPP 347


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 230 GRGGGXGPXXGGGWGXGG 177
           GRG G G   GG  G GG
Sbjct: 79  GRGKGRGHGKGGSRGRGG 96


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 174  PPPXPPTPPXXGXPXPPPAPP 236
            PPP  P+P   G P  P   P
Sbjct: 1166 PPPFMPSPFMAGAPNVPTILP 1186


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,540
Number of Sequences: 438
Number of extensions: 7761
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)