Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G08
         (845 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR456811-1|CAG33092.1|  360|Homo sapiens RNUT1 protein.               112   2e-24
BC004203-1|AAH04203.1|  360|Homo sapiens snurportin 1 protein.        112   2e-24
AF039029-1|AAC70906.1|  360|Homo sapiens snurportin1 protein.         112   2e-24

>CR456811-1|CAG33092.1|  360|Homo sapiens RNUT1 protein.
          Length = 360

 Score =  112 bits (269), Expect = 2e-24
 Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
 Frame = +2

Query: 182 GRTKLYNKYGRFRLDTKTLLPGGHPNKGYQKTDCCVLDGFYDSLSNSVYIIDLLAWNNQA 361
           G T  Y K G       +LLPGG+      K D  +LD  Y+ ++ + Y++D++ W    
Sbjct: 137 GSTSAYTKSGYCVNRFSSLLPGGNRRNSTAK-DYTILDCIYNEVNQTYYVLDVMCWRGHP 195

Query: 362 MTDGETDFRHFWLQTQVFIIQALNVLSKVNKLKFFLLPKVPCSREEL-NQFMMTYPAFEN 538
             D +TDFR +W+ +++   + L   +K+N  KF  L   PC+ E L +   M +P FE 
Sbjct: 196 FYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFP-FE- 253

Query: 539 YIPALDGLLFYHKKTHYISGQTPLVGWLYPFM 634
               +DGLLFYHK+THY  G TPLVGWL P+M
Sbjct: 254 ----VDGLLFYHKQTHYSPGSTPLVGWLRPYM 281


>BC004203-1|AAH04203.1|  360|Homo sapiens snurportin 1 protein.
          Length = 360

 Score =  112 bits (269), Expect = 2e-24
 Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
 Frame = +2

Query: 182 GRTKLYNKYGRFRLDTKTLLPGGHPNKGYQKTDCCVLDGFYDSLSNSVYIIDLLAWNNQA 361
           G T  Y K G       +LLPGG+      K D  +LD  Y+ ++ + Y++D++ W    
Sbjct: 137 GSTSAYTKSGYCVNRFSSLLPGGNRRNSTAK-DYTILDCIYNEVNQTYYVLDVMCWRGHP 195

Query: 362 MTDGETDFRHFWLQTQVFIIQALNVLSKVNKLKFFLLPKVPCSREEL-NQFMMTYPAFEN 538
             D +TDFR +W+ +++   + L   +K+N  KF  L   PC+ E L +   M +P FE 
Sbjct: 196 FYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFP-FE- 253

Query: 539 YIPALDGLLFYHKKTHYISGQTPLVGWLYPFM 634
               +DGLLFYHK+THY  G TPLVGWL P+M
Sbjct: 254 ----VDGLLFYHKQTHYSPGSTPLVGWLRPYM 281


>AF039029-1|AAC70906.1|  360|Homo sapiens snurportin1 protein.
          Length = 360

 Score =  112 bits (269), Expect = 2e-24
 Identities = 59/152 (38%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
 Frame = +2

Query: 182 GRTKLYNKYGRFRLDTKTLLPGGHPNKGYQKTDCCVLDGFYDSLSNSVYIIDLLAWNNQA 361
           G T  Y K G       +LLPGG+      K D  +LD  Y+ ++ + Y++D++ W    
Sbjct: 137 GSTSAYTKSGYCVNRFSSLLPGGNRRNSTAK-DYTILDCIYNEVNQTYYVLDVMCWRGHP 195

Query: 362 MTDGETDFRHFWLQTQVFIIQALNVLSKVNKLKFFLLPKVPCSREEL-NQFMMTYPAFEN 538
             D +TDFR +W+ +++   + L   +K+N  KF  L   PC+ E L +   M +P FE 
Sbjct: 196 FYDCQTDFRFYWMHSKLPEEEGLGEKTKLNPFKFVGLKNFPCTPESLCDVLSMDFP-FE- 253

Query: 539 YIPALDGLLFYHKKTHYISGQTPLVGWLYPFM 634
               +DGLLFYHK+THY  G TPLVGWL P+M
Sbjct: 254 ----VDGLLFYHKQTHYSPGSTPLVGWLRPYM 281


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,617,007
Number of Sequences: 237096
Number of extensions: 2120422
Number of successful extensions: 3006
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3003
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)