Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G08
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024493-2|AAB70323.1|  322|Caenorhabditis elegans Hypothetical ...    87   2e-17

>AF024493-2|AAB70323.1|  322|Caenorhabditis elegans Hypothetical
           protein F23F1.5 protein.
          Length = 322

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 53/151 (35%), Positives = 78/151 (51%)
 Frame = +2

Query: 182 GRTKLYNKYGRFRLDTKTLLPGGHPNKGYQKTDCCVLDGFYDSLSNSVYIIDLLAWNNQA 361
           G T  YNK GR     ++ LPGG+     Q     +LD  Y +   + Y++DLL+WN   
Sbjct: 136 GFTVAYNKGGREVSRFQSRLPGGNTRAKNQAWT--ILDCIYSN--QTYYVLDLLSWNAHE 191

Query: 362 MTDGETDFRHFWLQTQVFIIQALNVLSKVNKLKFFLLPKVPCSREELNQFMMTYPAFENY 541
             +   DFR F L++++     L   +   +  F  +P  PCS++++ + M    +F   
Sbjct: 192 YVESPYDFRQFMLKSKLEEAPELAKSTPGFRNIFSPIPSCPCSQDQMAELMKNEISFR-- 249

Query: 542 IPALDGLLFYHKKTHYISGQTPLVGWLYPFM 634
              LDGLLFYH    Y  GQ+PLVGWL P+M
Sbjct: 250 ---LDGLLFYHNSVVYQPGQSPLVGWLKPWM 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,075,673
Number of Sequences: 27780
Number of extensions: 346200
Number of successful extensions: 698
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)