Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G06
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...   268   1e-72
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    81   3e-16
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    28   2.1  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   2.7  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   6.3  

>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score =  268 bits (656), Expect = 1e-72
 Identities = 128/208 (61%), Positives = 156/208 (75%), Gaps = 9/208 (4%)
 Frame = +1

Query: 286 LNRACAALPENYNFEIHKTIWRIRSTAAKRVALQMPEGLTMFATTLCDIIETFTEADTVI 465
           +N A   LP+NYNFEIHKTIW IR   AKRVALQ+PEGL MF   L DI E F + +T++
Sbjct: 62  INEAIKLLPQNYNFEIHKTIWHIRLRKAKRVALQLPEGLLMFGCILSDIFEQFCQVETIV 121

Query: 466 MGDVTYGACCIDDFTAVALGVDLLVHYGHSCLIPIDQTSSIKVLYIFVDIKIDPSHFIET 645
           MGDVTYGACCIDDFTA AL  D LVHYGHSCLIP+DQT  IKVLY+FVDIKID  H + +
Sbjct: 122 MGDVTYGACCIDDFTARALDCDFLVHYGHSCLIPVDQT-PIKVLYVFVDIKIDLQHVVSS 180

Query: 646 IKVNFPSKTHLALVSTIQFVTTLHSVAKNLRIEE------YMVTVPQTKPLSPGEILGCT 807
           +K N PS + LALV TIQFV +L+S+   L+I++      + V +PQ KPLSPGE LGCT
Sbjct: 181 LKHNLPSNSRLALVGTIQFVGSLNSIKDALQIQDEDGKGGFYVVIPQAKPLSPGEALGCT 240

Query: 808 APKLQ---ADAIVYLGDGRFXLESIMIA 882
           +P ++    DA++Y+GDGRF LES+MIA
Sbjct: 241 SPYIEKGSVDALIYIGDGRFHLESVMIA 268


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 80.6 bits (190), Expect = 3e-16
 Identities = 46/142 (32%), Positives = 76/142 (53%)
 Frame = +1

Query: 325 FEIHKTIWRIRSTAAKRVALQMPEGLTMFATTLCDIIETFTEADTVIMGDVTYGACCIDD 504
           +EI++T+  I+S     VALQ P+     +  +  I+    EA+  I+ D  YG+CC+D+
Sbjct: 37  YEINRTVDFIKSGNYNSVALQFPDEHLADSGKVASILTNLVEANVQILADTNYGSCCVDE 96

Query: 505 FTAVALGVDLLVHYGHSCLIPIDQTSSIKVLYIFVDIKIDPSHFIETIKVNFPSKTHLAL 684
             A  +  D +VHYG +CL P   TS + VLY+F  + I+  H +E   +  P   ++ L
Sbjct: 97  VAAEHMSADAIVHYGRACLSP---TSRLPVLYVFGRLPIN-LHKLEKC-LTIPLDQNILL 151

Query: 685 VSTIQFVTTLHSVAKNLRIEEY 750
           VS  ++     S+ K+L+   Y
Sbjct: 152 VSDTRWYYAQDSILKSLKTLGY 173


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 397 GLTMFATTLCDIIETFTEADTVIMGDVTYGACCIDDFTAVALGVDLLVH 543
           GLT + T   D  +   E+  +++ D   G CCID+F  ++     ++H
Sbjct: 577 GLTAYITRDQDTKQLVLESGALVLSDG--GICCIDEFDKMSDATRSILH 623


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = -2

Query: 524 PSATAVKSSIQQAPYVTSPIITVSASVNVSIMSQRVVANIVRPSGICRATRFAAVDRILH 345
           PSAT  +S + Q PY T P +T     N ++ +Q V+A+ V P      +   AV + +H
Sbjct: 753 PSATG-QSGVVQQPYQTQPSVT-----NNNVATQPVIASTV-PVQTAAPSSQTAVPQTIH 805


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
 Frame = -1

Query: 612 IHKYVQNLNTTSLIYGN*ARVS-----IVHKEVYTECHSSEVIYTAGSVCHISHYHSIGF 448
           IH YV+      L YG   RV+     I+H+ +Y       + Y    VC++ +Y+   F
Sbjct: 6   IHLYVKK----DLTYGECVRVAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKNYNGFSF 61

Query: 447 GECFYYVTEG 418
             C+ ++  G
Sbjct: 62  -FCWVFLNLG 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,573,874
Number of Sequences: 5004
Number of extensions: 74377
Number of successful extensions: 159
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)