Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_G06
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1210 - 34954006-34955412 188 4e-48
11_03_0017 + 8990852-8990938,8991056-8991243,8991687-8991795,899... 60 2e-09
01_01_1103 - 8744873-8745724 32 0.54
06_03_1336 - 29424470-29424897,29425243-29429653 32 0.71
01_05_0265 + 20188160-20188211,20188291-20189019,20189103-201892... 31 1.6
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553... 28 8.8
06_03_0545 + 21983666-21986086 28 8.8
02_01_0339 - 2412243-2413337 28 8.8
01_07_0229 + 42161770-42164562 28 8.8
>02_05_1210 - 34954006-34955412
Length = 468
Score = 188 bits (459), Expect = 4e-48
Identities = 95/208 (45%), Positives = 133/208 (63%), Gaps = 12/208 (5%)
Frame = +1
Query: 295 ACAALPENYNFEIHKTIWRIRSTAAKRVALQMPEGLTMFATTLCDIIETFTEAD----TV 462
A LP YNFE+ KT RIRS+ A+R ALQ+PEGL +F+ L ++ F E D +
Sbjct: 50 ATGLLPAAYNFELPKTAHRIRSSGARRTALQLPEGLLLFSLPLSHLLAPFLEPDPSNDVL 109
Query: 463 IMGDVTYGACCIDDFTAVALGVDLLVHYGHSCLIPIDQTSSIKVLYIFVDIKIDPSHFIE 642
I+ D TYGACC+ D A AL D+LVHYGHSCL+P+ +S + VLY+FV+I++D +
Sbjct: 110 ILADPTYGACCLADRPAKALAADVLVHYGHSCLVPV-TSSLLPVLYVFVEIRVDAQRLAD 168
Query: 643 TIKVNFPSKT---HLALVSTIQFVTTLHSVAKNLRIEEYM-VTVPQTKPLSPGEILGCTA 810
++ FP LA+ T+QF++ +H+ + L + Y + VPQ KPLS GE+LGCTA
Sbjct: 169 AVRAAFPDPADAPRLAIAGTVQFISAVHAAREILSHDGYQGIVVPQAKPLSAGEVLGCTA 228
Query: 811 PKLQ----ADAIVYLGDGRFXLESIMIA 882
P L+ A+V++ DGRF LE+ MIA
Sbjct: 229 PALKRSEGVGAVVFVADGRFHLEAFMIA 256
>11_03_0017 +
8990852-8990938,8991056-8991243,8991687-8991795,
8992448-8992832,8993240-8993309,8993410-8993477,
8995009-8995124,8995211-8995317,8995488-8995627,
8995794-8996044
Length = 506
Score = 60.1 bits (139), Expect = 2e-09
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Frame = +1
Query: 325 FEIHKTIWRIRSTAAKRVALQMPEGLTMFATTLCDIIETFTEADTV---IMGDVTYGACC 495
+E+ +T IR+ A RVALQ P+ + A + + V +M D Y +CC
Sbjct: 9 YEVPRTAEFIRARAYTRVALQFPDEMLRDAAAVAQALRRELGGGGVKLFVMADTAYNSCC 68
Query: 496 IDDFTAVALGVDLLVHYGHSCLIPIDQTSSIKVLYIFVDIKID 624
+D+ A + +VHYGH+C+ P TS++ ++F +D
Sbjct: 69 VDEVGASHIDAQCVVHYGHACMSP---TSNLPAFFVFGKTPLD 108
>01_01_1103 - 8744873-8745724
Length = 283
Score = 32.3 bits (70), Expect = 0.54
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -2
Query: 833 IASACNLGAVHPSISPGESGL 771
+A AC+ GA+HPS++P SG+
Sbjct: 249 VARACHAGALHPSVAPNVSGM 269
>06_03_1336 - 29424470-29424897,29425243-29429653
Length = 1612
Score = 31.9 bits (69), Expect = 0.71
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = +1
Query: 286 LNRACAALPENYNFEIHKTIWRIRSTAAKRVALQMPEGLTMFATTLCDIIETFTEADTVI 465
L CA + N E+ ++ IRS+ +A+ P +T AT + E D +I
Sbjct: 219 LKLVCAKVSTILNLELPESNRTIRSS----IAMLRP--VTTSATIEPEFYGRKGEKDRII 272
Query: 466 MGDVTYGACCIDDFTAVAL 522
D+T+G CC+ D T + +
Sbjct: 273 K-DITHGDCCVKDLTVIPI 290
>01_05_0265 +
20188160-20188211,20188291-20189019,20189103-20189231,
20189857-20189938,20190034-20190166,20190269-20190340,
20190478-20190573,20190651-20190764,20190838-20191050,
20191144-20191242,20191328-20191488,20191589-20191685,
20191828-20191989,20192068-20192148,20192242-20192320,
20192414-20192550,20192638-20192688,20192776-20192844,
20193583-20193700,20194142-20194197
Length = 909
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 397 GLTMFATTLCDIIETFTEADTVIMGDVTYGACCIDDFTAVALGVDLLVH 543
GLT + T + ET E+ +++ D G CCID+F ++ ++H
Sbjct: 526 GLTAYVTKDPETGETVLESGALVLSDK--GVCCIDEFDKMSDNARSMLH 572
>09_02_0569 -
10752756-10753164,10753229-10753644,10754149-10755349,
10756770-10756991,10757615-10757767,10757883-10758034,
10758142-10758222,10758353-10758598,10759394-10759516
Length = 1000
Score = 28.3 bits (60), Expect = 8.8
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = -3
Query: 568 WELGKSVHSAQGGLHRVPQQ*SHLYSRLRMSHLPLSQYRLR*MFLLCHRGSLQT*LDL 395
WEL ++ Q H+VP + LYS L +S+ L R + FL S T LDL
Sbjct: 674 WELAVNLLE-QSQFHKVPDVENDLYSVLYISYDNLPDERTKQCFLFFAFASYGTHLDL 730
>06_03_0545 + 21983666-21986086
Length = 806
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 664 SKTHLALVSTIQFVTTLHSVAKNLRIEEY-MVTVPQTKPLSPGEILGCTAPK 816
S H+ T+ + V + L++ E+ M ++PQ++P P C A K
Sbjct: 389 SLPHIGSTGTMYLKLPMEEVLEELQLSEHSMTSIPQSQPFGPKYGPDCNANK 440
>02_01_0339 - 2412243-2413337
Length = 364
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 781 SPGEILGCTAPKLQADAIVYLGDGRFXLESI 873
SPGE G AP+ A +V+LG G+ + +
Sbjct: 272 SPGEWKGLAAPREVASHVVHLGGGKLCVAKV 302
>01_07_0229 + 42161770-42164562
Length = 930
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 568 WELGKSVHSAQGGLHRVPQQ*--SHLYSRLRMSHLPLSQYRLR*MFLLC 428
W L S + + +H +P SH+Y+RL++S+ L +++ FL C
Sbjct: 332 WALALS-YLKKSRIHEIPNMGNTSHIYTRLKLSYDYLQDKQIKYCFLCC 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,321,210
Number of Sequences: 37544
Number of extensions: 449894
Number of successful extensions: 873
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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