Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G06
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical pr...   250   1e-66
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    54   1e-07
Z37092-9|CAA85458.1|  126|Caenorhabditis elegans Hypothetical pr...    30   2.6  
U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated p...    29   4.5  
M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.        29   4.5  
U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z37139-9|CAA85493.1|  396|Caenorhabditis elegans Hypothetical
           protein C14B1.5 protein.
          Length = 396

 Score =  250 bits (612), Expect = 1e-66
 Identities = 118/205 (57%), Positives = 149/205 (72%), Gaps = 5/205 (2%)
 Frame = +1

Query: 280 PXLNRACAALPENYNFEIHKTIWRIRSTAAKRVALQMPEGLTMFATTLCDIIETFTEADT 459
           P L      LP NY FE+ KTIW+IRST +K VALQ PEGL M+A  + DI+E +T  DT
Sbjct: 19  PNLKEDLKILPSNYTFEVPKTIWKIRSTESKYVALQFPEGLIMYACVIADILEKYTGCDT 78

Query: 460 VIMGDVTYGACCIDDFTAVALGVDLLVHYGHSCLIPIDQTSSIKVLYIFVDIKIDPSHFI 639
           VIMGDVTYGACC+DD+TA ++G DLLVHYGHSCL+PI  T  I +LY+FV+I I+ SH I
Sbjct: 79  VIMGDVTYGACCVDDYTAKSMGCDLLVHYGHSCLVPIQNTDGIAMLYVFVNIHINLSHLI 138

Query: 640 ETIKVNFPSKTHLALVSTIQFVTTLHSVAKNLRIEE--YMVTVPQTKPLSPGEILGCTAP 813
           + +K NF  K  L +VST+QF+ +L ++      ++    + +PQ KPLSPGE+LGCT+P
Sbjct: 139 DCVKENFQGK-RLVVVSTVQFIPSLQTLRTTFNKDDSSIRIDIPQCKPLSPGEVLGCTSP 197

Query: 814 KLQA---DAIVYLGDGRFXLESIMI 879
           +L A   DAIVYLGDGRF LESIMI
Sbjct: 198 RLDASKYDAIVYLGDGRFHLESIMI 222


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
 Frame = +1

Query: 307 LPEN---YNFEIHKTIWRIRSTAAKRVALQMPEGLTMFATTLCDIIETFTEAD----TVI 465
           LPEN     FEI  T   I+    +R+ALQ P+ L  ++  +  +IE+   ++    T +
Sbjct: 33  LPENDIHSFFEIDATSEWIKQGNHQRIALQFPDSLLPYSEKVTKLIESRFRSESAKKTFV 92

Query: 466 MGDVTYGACCIDDFTAVALGVDLLVHYGHSCLIPIDQTSSIKVLYIFVDIKIDPSHFIET 645
           + D +Y +CC+D+  A       LVH+G +C      T  I V Y+   + I    FI+ 
Sbjct: 93  LADTSYRSCCVDEVAAAHADCTALVHFGEAC--HSAPTDKIDVKYVLGSMPI----FIDQ 146

Query: 646 IKVNF 660
            ++ F
Sbjct: 147 FRMEF 151


>Z37092-9|CAA85458.1|  126|Caenorhabditis elegans Hypothetical
           protein F44F4.9 protein.
          Length = 126

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +1

Query: 571 DQTSSIKVLYIFVDIKIDPSHFIETIKVNFPSKTHLAL--VSTIQFVTTLHSVAKNLRIE 744
           D  S I+ L  F +I I   H ++     F   + LA+  +ST+ F  +L+S  KN R+ 
Sbjct: 7   DYMSGIQFLNSFQNIYI---HSVKDTLAMFTLYSTLAIFVISTVIFGLSLYSFLKNRRLR 63

Query: 745 EYMVTVPQ 768
           ++ ++ PQ
Sbjct: 64  QFKLSEPQ 71


>U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated
           protein 6 protein.
          Length = 612

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -3

Query: 358 TVFSISSCVFRNYNFLVKPRK--PCLXRGSFNKSSGILF--KDLTLGLKVFLCPSGFARI 191
           T  S +SCV  N N   K  +    L R S N+S G+    +  T G    LC  GF R 
Sbjct: 337 TANSANSCVACNCNQHAKRCRFDAELFRLSGNRSGGVCLNCRHNTAGRNCHLCKPGFVRD 396

Query: 190 TTIP 179
           T++P
Sbjct: 397 TSLP 400


>M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.
          Length = 612

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = -3

Query: 358 TVFSISSCVFRNYNFLVKPRK--PCLXRGSFNKSSGILF--KDLTLGLKVFLCPSGFARI 191
           T  S +SCV  N N   K  +    L R S N+S G+    +  T G    LC  GF R 
Sbjct: 337 TANSANSCVACNCNQHAKRCRFDAELFRLSGNRSGGVCLNCRHNTAGRNCHLCKPGFVRD 396

Query: 190 TTIP 179
           T++P
Sbjct: 397 TSLP 400


>U13019-5|AAC24444.1|  994|Caenorhabditis elegans Hypothetical
           protein T12A2.5 protein.
          Length = 994

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 180 GIVVIRAKPEGQRKTFKPKVRSLNKIPDDLLNDPL 284
           G+V+I     GQRKT +PK +S N       N+PL
Sbjct: 491 GLVIIVGFASGQRKTSEPK-KSSNPFASKKYNNPL 524


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,854,775
Number of Sequences: 27780
Number of extensions: 424598
Number of successful extensions: 885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)