Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G05
         (892 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   1.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   1.2  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   2.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   6.5  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   6.5  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   6.5  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   6.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   6.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 263 ALFSRGSFNKSSGILFKDLTLGLKVFLCPSGFARITTIPGLVGKIFH 123
           AL + GS+NK +  ++KD  +   V  C S  + I  I  +VG + H
Sbjct: 297 ALVALGSYNKFNNNVYKDALIVCTVNSCTSMLSGI-VIFSVVGFMAH 342


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 263 ALFSRGSFNKSSGILFKDLTLGLKVFLCPSGFARITTIPGLVGKIFH 123
           AL + GS+NK +  ++KD  +   V  C S  + I  I  +VG + H
Sbjct: 350 ALVALGSYNKFNNNVYKDALIVCTVNSCTSMLSGI-VIFSVVGFMAH 395


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 272 AAQALFSRGSFNKSSGILFKDLTLGLKVFL 183
           A + L  RG   + SG+++++    LKVFL
Sbjct: 34  AIRRLARRGGVKRISGLIYEETRGVLKVFL 63


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 192 SLSLSFRFRTYNNYTRISW*N 130
           SLS ++++  YNNY   ++ N
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNN 104


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 192 SLSLSFRFRTYNNYTRISW*N 130
           SLS ++++  YNNY   ++ N
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNN 104


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 192 SLSLSFRFRTYNNYTRISW*N 130
           SLS ++++  YNNY   ++ N
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNN 104


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 192 SLSLSFRFRTYNNYTRISW*N 130
           SLS ++++  YNNY   ++ N
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNN 104


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 417 FGECFYYVTEGRCKH 373
           +GE  + +T G+C+H
Sbjct: 404 YGELLHALTSGKCEH 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,946
Number of Sequences: 438
Number of extensions: 5053
Number of successful extensions: 32
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)