Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G04
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   3.6  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    26   6.2  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   8.2  
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    26   8.2  

>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 692 KMCLSFSLFNSCAFFSTYLQIYCI 763
           ++CLS    NS + F TY Q+ C+
Sbjct: 47  QLCLSHPSINSLSSFQTYHQLLCV 70


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 721 LLCIFFYILANLLHPS 768
           LLCIFF I + + HPS
Sbjct: 43  LLCIFFTIFSTMSHPS 58


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +1

Query: 298 VCTIMLQRYLLQNGTSVYTLVDRFKVVTNVCYVILSLQKLLPPITGTRN 444
           V T++  R+    GTS+Y ++     +++   ++++L  +L  +TG  N
Sbjct: 425 VGTLLKSRFPSLAGTSIYGVIGSIAFLSSTTRLVVALVVILFELTGALN 473


>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -2

Query: 692 LRHNNQFKVSEIRNILFRLFKPYLRYLWKTMAMGHNII 579
           +R+NN    +E+RN +F+  K + +++ K   +   I+
Sbjct: 6   VRNNNAASDAEVRNTVFKFNKDFGQHILKNPLVAQGIV 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,290
Number of Sequences: 5004
Number of extensions: 59555
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)