Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G03
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    42   1e-04
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    39   0.001
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.51 
SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces po...    29   0.90 
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    28   1.6  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    27   3.6  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   6.3  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    26   6.3  
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po...    26   8.4  
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    26   8.4  

>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 22/57 (38%), Positives = 29/57 (50%)
 Frame = +2

Query: 233 VSIDLVPERKGIILKHCEYYVSSRRHGTTVTRRYNDFVQLYDVLFAKYPYRAVCQLP 403
           V IDL P       +H  Y +S   +   V RRY+DF  L+  L  KYP+R V  +P
Sbjct: 289 VDIDLEPSGY-FFYRHNNYIISDSSNTREVLRRYSDFFWLHSYLMKKYPFRRVPLIP 344


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +3

Query: 345 YSFTMCYLLNILIGLYVSYLRKRVVVGGGSGQFLESRRAALQRWLSLAACHPILAHDADL 524
           ++F    L N   G  +  + ++ VVG    +F+E RRAAL+  L   + HP+L  D   
Sbjct: 248 FAFLYQLLSNNHPGCIIPPIPEKQVVGRFDDEFIEQRRAALEVMLRKISAHPVLRDDYSF 307

Query: 525 RTFL 536
           + FL
Sbjct: 308 KLFL 311



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 23/57 (40%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
 Frame = +2

Query: 260 KGIILKHCEYYVSSR--RHG------TTVTRRYNDFVQLYDVLFAKYPYRAVCQLPP 406
           K I   H  Y VS+R   H        TV RRYNDF  LY +L   +P    C +PP
Sbjct: 213 KEITKSHTVYSVSTRLEEHNQPSVSNVTVQRRYNDFAFLYQLLSNNHP---GCIIPP 266


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +2

Query: 293 VSSRRHGTTVTRRYNDFVQLYDVLFAKYPYRAVCQLPP----XTCGGWGRKWTVLRIPSR 460
           VS   +   + R+Y+DF   + +L   YP   V +LPP     T        T+  +PSR
Sbjct: 197 VSYEENTFFIARKYSDFSHFHHLLLKSYPNAYVPRLPPKDDHDTYLNSSEDSTLSPLPSR 256

Query: 461 CSPT 472
            S T
Sbjct: 257 SSDT 260


>SPBC14F5.11c |mug186||sorting nexin Snx41|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 586

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 438 QFLESRRAALQRWLSLAACHPILAHDADLRTFLSESV 548
           + LE R+  LQ +L   A HPIL      R FLS  V
Sbjct: 147 RMLEERKRLLQLFLRRVAQHPILGLSEVFRKFLSRHV 183


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 702 AXVYPSPSTRSAVVPAPSQTSPSFRLEVFLP 610
           A + P P+  S + P P+ TSPS  +E+  P
Sbjct: 275 ASIAPQPTGASTIAPQPTGTSPSPPVEMNFP 305


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/87 (22%), Positives = 41/87 (47%)
 Frame = -2

Query: 711 RISAXVYPSPSTRSAVVPAPSQTSPSFRLEVFLPVHRTEYRQARTRRA*VSRGAGPTQIE 532
           R S  V P+PSTR+       Q  PS  + ++      EY +++ + + + R   P  + 
Sbjct: 726 RQSDVVSPAPSTRARGQSVSGQQRPSSSMSLY-----GEYNKSQPQLS-MQRSVSPNPLG 779

Query: 531 RCASQRHAPILDDRRPTIANVGEQRDG 451
              ++R + +L  ++ T +N   + +G
Sbjct: 780 --PNRRSSSVLQSQKSTSSNTSNRNNG 804


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 522 LRTFLSESVLRLEKPKHDEFVLAGTQCDEQEETPLD-EMKARFAKEQ 659
           L+T  S S  R  KPK+ +    GT+ D  +E P+D E + +  K+Q
Sbjct: 360 LKTVASNSKYRT-KPKNCKTYGDGTELDTLDELPVDYEFELKLRKKQ 405


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 111 DRCTNPPPNFLRQDISTDKNN 49
           DRC N PP+F  +   T K N
Sbjct: 370 DRCANHPPSFDERSCFTSKQN 390


>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 305 RHGTTVTRRYNDFVQLYDVLFAKYP 379
           R G  V RRY +F +L+  L   YP
Sbjct: 733 RSGWMVARRYREFAELHKQLKQTYP 757


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 317 TVTRRYNDFVQLYDVLFAKYPYRAVCQLP 403
           +V RRY DF  L+++L   Y   A+  LP
Sbjct: 40  SVRRRYKDFEMLHNILSHDYNGYAIPPLP 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,588
Number of Sequences: 5004
Number of extensions: 56045
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)