Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_G03
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448... 44 2e-04
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 37 0.019
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104... 33 0.23
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 32 0.54
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 30 2.2
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 30 2.2
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 29 3.8
09_04_0005 + 13612060-13612291,13612381-13612510,13612726-136129... 29 5.0
10_07_0133 + 13274190-13274317,13274533-13276371,13277064-132772... 29 6.6
09_04_0352 + 16908942-16909030,16909295-16909464,16909535-169096... 28 8.8
08_01_0987 + 9979651-9979746,9979818-9980058,9980947-9981090,998... 28 8.8
>05_05_0195 +
23142830-23143714,23144288-23144314,23144657-23144866,
23144976-23145242,23146290-23146376,23146495-23146553,
23147166-23147768,23148063-23148192,23148570-23149100,
23149636-23149743,23149911-23150456,23150957-23151079,
23151494-23151709
Length = 1263
Score = 44.0 bits (99), Expect = 2e-04
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +3
Query: 384 GLYVSYLRKRVVVGGGSGQ---FLESRRAALQRWLSLAACHPILAHDADLRTFLSE 542
GL++ + VV G Q F+ R +ALQR+L A HP++ H DLRTFL+E
Sbjct: 155 GLFIPARPDKSVVEGQVMQRHDFVNQRCSALQRYLRRLAAHPVVGHSPDLRTFLTE 210
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 37.1 bits (82), Expect = 0.019
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +3
Query: 384 GLYVSYLRKRVVVGGGSGQ---FLESRRAALQRWLSLAACHPILAHDADLRTFLSE 542
GL+V + +V G Q F+ R AALQR+L A HP + A+L FL+E
Sbjct: 219 GLFVPARPDKSIVEGQVMQRHEFVNQRCAALQRYLGRLAAHPTIGRSAELHDFLTE 274
>01_06_1430 -
37309737-37309946,37310049-37310100,37310348-37310427,
37310538-37310606,37310710-37310843,37311173-37311332,
37311483-37311554,37312113-37312246,37312386-37312521,
37313273-37313416
Length = 396
Score = 33.5 bits (73), Expect = 0.23
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 432 SGQFLESRRAALQRWLSLAACHPILAHDADLRTFLSESVLRLEKPKHDE 578
S +F+E RR AL +++ A HP L DL+ FL ++++ + E
Sbjct: 99 SKEFIELRRQALDLFVNRIASHPELKQSGDLKIFLQADEEKMDRERSYE 147
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 32.3 bits (70), Expect = 0.54
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 438 QFLESRRAALQRWLSLAACHPILAHDADLRTFL 536
+F+ RRAAL+R+L A HP + +LR FL
Sbjct: 190 EFVAQRRAALERYLWRLAEHPAIGPSDELRVFL 222
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
Frame = +1
Query: 178 IMTNTNEVTFQXARSN*CCKHRPCTRTEGNYT---KTLRVLCQLKASWHNCNQKI 333
I N +V F A + C H C +GN L LC LK SW N+ I
Sbjct: 1951 IFNNFKKVRFSEAATL-CIPHLVCALKDGNEAAQESVLDTLCLLKESWPQMNEDI 2004
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/86 (27%), Positives = 42/86 (48%)
Frame = +3
Query: 465 LQRWLSLAACHPILAHDADLRTFLSESVLRLEKPKHDEFVLAGTQCDEQEETPLDEMKAR 644
+++ LS HP +AH L S+ + E + E VL T +++E+ LDE R
Sbjct: 1 MEQELSWEGFHPSIAHQL-LDGMPSQPGMSKEDQRISEPVLINTTMNKEEKW-LDEALDR 58
Query: 645 FAKEQEQLRILYLGMDRLXQIFDRVK 722
++ EQ+ D+L Q F +++
Sbjct: 59 ILEKFEQMEAKRRQEDKLNQNFQKLE 84
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 29.5 bits (63), Expect = 3.8
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = -2
Query: 639 PSFRLEVFLPVHRTEYRQARTRRA*VSRGAGPTQIERCASQRHAPILDDRRPTIANVGEQ 460
P +E L H + +QA RRA + G G +ER S+ + RP
Sbjct: 698 PGVNMEEILREHERQIQQA-VRRARLDMGKGKNHVERDQSESLLYTTQNGRPKDGESTSV 756
Query: 459 RDGILRTVHFRPQPP 415
+ G L R PP
Sbjct: 757 KKGTLSPHGSRESPP 771
>09_04_0005 +
13612060-13612291,13612381-13612510,13612726-13612926,
13613086-13613185,13613513-13613559,13613871-13613964,
13614042-13614192,13614777-13614923,13614994-13615067,
13615288-13615376,13615840-13615954,13616104-13616301
Length = 525
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 345 YSFTMCYLLNILIGLYVSYLRKRVVVG 425
+SFT+ ++ N L+GLY L K++ VG
Sbjct: 454 FSFTVHWICNFLVGLYFLELAKKLGVG 480
>10_07_0133 +
13274190-13274317,13274533-13276371,13277064-13277253,
13277442-13277657
Length = 790
Score = 28.7 bits (61), Expect = 6.6
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 9/108 (8%)
Frame = +3
Query: 426 GGSGQFLESRRAALQRWLSLAACHPIL------AHDADLRTFLSESVLRLEKPKHDEFVL 587
GGSG L R + + S A C +L AHD + + E PK D+
Sbjct: 35 GGSGD-LGGRMELIGEYCSNAPCKWLLDLGKGGAHDTNAHNLFDGMPSQSEIPKEDQRTS 93
Query: 588 AGTQCDE---QEETPLDEMKARFAKEQEQLRILYLGMDRLXQIFDRVK 722
+ +EE LD+ R ++ EQ+ + +++ QIF +++
Sbjct: 94 KPVPINSTMNKEEKWLDKALDRILEKFEQMEAKRMQEEKINQIFQKLE 141
>09_04_0352 +
16908942-16909030,16909295-16909464,16909535-16909608,
16909828-16909916,16910378-16910492,16910642-16910839
Length = 244
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 345 YSFTMCYLLNILIGLYVSYLRKRVVVG 425
+SFT+ ++ N L+GLY L K++ VG
Sbjct: 173 FSFTVHWICNFLVGLYFLELVKKLGVG 199
>08_01_0987 +
9979651-9979746,9979818-9980058,9980947-9981090,
9981253-9981313,9981603-9982061,9982472-9982529,
9983579-9983839
Length = 439
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 510 HDADLRTFLSESVLRLEKPKHDEFVLAGTQCDEQE 614
H A+ FL+ SVL LE P D+ V G Q ++E
Sbjct: 224 HSAEAIDFLTSSVLSLEAPL-DQMVAGGRQTRQEE 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,997,780
Number of Sequences: 37544
Number of extensions: 420424
Number of successful extensions: 1255
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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