Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G03
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              27   0.23 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.94 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.8  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 513 DADLRTFLSESVLRLEKPKHDEFVLAGTQCDEQEETPLDEMKA 641
           D DL+TF  +  L  E   H +F+    +CD      L  +KA
Sbjct: 103 DEDLKTFFHKIALTCEDDVHRKFLHVNDECDVALSFKLCMLKA 145


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +3

Query: 519 DLRTFLSESVLRLEKPKHD---EFVLAGTQCDEQEETPLDEMKARFAKEQEQLRILYLGM 689
           DL   ++  +   +   HD   + +LAGTQ   + +  LD+ + +  K +E +R L   M
Sbjct: 329 DLNALIATGLYINDLSMHDFSRDLMLAGTQQSVELKLALDQEQLKSKKLEESMRKLDEEM 388

Query: 690 DRLXQI 707
            R  ++
Sbjct: 389 KRTDEL 394


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -2

Query: 273 SIIPFRSGTRSMLTTSVASSSLKCYFICICHNCRCFITLSFCLLALN*CIRRLKD 109
           S  P ++ + S L       SL   F+ +C + R   +   CL ++N  IR   +
Sbjct: 317 SSTPSQASSCSCLDCDEIRESLDTQFLQVCRSRRHSDSCCLCLDSMNAVIRNFNE 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,317
Number of Sequences: 438
Number of extensions: 4147
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)