Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G02
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     33   0.29 
09_06_0138 + 21084679-21085437                                         30   2.0  
03_02_0108 + 5665858-5666048,5666402-5666453                           29   4.7  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.1  
06_01_0896 - 6889754-6890236                                           28   8.1  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 688 LSRGKRLVSL*SRRVSPPLX*ASIFVMLVQGGGANGKTPAT 566
           LSRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 24  LSRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>09_06_0138 + 21084679-21085437
          Length = 252

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 597 PWTSITKIDAQXRGGETRRDYKDTRRFPLESSPRCALLG 713
           P  SI   +A+  GG +RR+++   R P  SSP+ + +G
Sbjct: 57  PIVSIVPPEARGGGGGSRREHRSGYRTPEPSSPKVSCIG 95


>03_02_0108 + 5665858-5666048,5666402-5666453
          Length = 80

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 576 VFPFAPPPWTSITKIDAQXRGGETR 650
           V PFAPP    +T+++ + RG  TR
Sbjct: 16  VRPFAPPAAAGVTEVEKELRGAATR 40


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 349 NESAN---ARGEAVCVLGALPLPRSLTRCAR 432
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>06_01_0896 - 6889754-6890236
          Length = 160

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = -2

Query: 808 PNRGELXRKAPPLPRKGE 755
           P RG L R APPLPR GE
Sbjct: 76  PRRGRL-RAAPPLPRSGE 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,839,257
Number of Sequences: 37544
Number of extensions: 395302
Number of successful extensions: 1059
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)