Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G01
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...   137   2e-33
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    31   0.28 
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   8.1  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   8.1  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   8.1  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score =  137 bits (332), Expect = 2e-33
 Identities = 72/162 (44%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
 Frame = +1

Query: 211 EARYFNSTPVHPRKCIHILTKILYLLNQGEELTTQEATDIFFATTKLFQSKDVVLRRLVY 390
           +AR FNS+ + PRK   +L+KI YL+  GE    ++AT++FF  TKLFQ KD  LR+ VY
Sbjct: 26  DARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEKQATELFFGITKLFQHKDPSLRQFVY 85

Query: 391 LCIKELSPMAQDVIIVTSSLTKD-MTGKDDEYRPAAIRALCSITDSTMLQAIERYMKQAI 567
           + IKELS +A+DVI++TSS+ KD  TG++  YRP AIR+L  + D+  + AIER +   I
Sbjct: 86  IIIKELSVVAEDVIMITSSIMKDTATGRETIYRPNAIRSLIRVIDANTVPAIERILTTGI 145

Query: 568 VDKNPXXXXXXXXXXXXXXXXXPDLVRRWINEAQEAMTSDHV 693
           VD                     D+V RW NE Q+A+TS +V
Sbjct: 146 VDPISAVASAALVSAYHLYPVAKDIVSRWNNEVQDAVTSHNV 187


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 33/146 (22%), Positives = 61/146 (41%)
 Frame = -2

Query: 734 LAPATTAKAW*ETIT*SEVMASCASFIQRRTKSGTVADRCKAETSAADPTAGFLSTIACF 555
           L  ATT+  +  +   S  + S ++     T S ++A      T++A PT+  L++ +  
Sbjct: 56  LKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSAT 115

Query: 554 MYLSIACSIVLSVMLHKARMAAGRYSSSLPVMSFVSEEVTMITSCAIGLNSLMHR*TKRR 375
                + S   S +   +  ++   SSS+   S  S   T  +  +   NS     T   
Sbjct: 116 SSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSA-TPTS 174

Query: 374 NTTSFD*NSFVVAKNISVASCVVNSS 297
           + TS   +S   A N + +S + +SS
Sbjct: 175 SATSSSLSS-TAASNSATSSSLASSS 199


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -2

Query: 764 SFTVDNLSLRLAPATTAKAW*ETIT*SEVMASCASFIQRRTKS-GTVADRCKAETSAADP 588
           S + DNL+  + P T A +   ++      A+ +S +   T S  TV     +  SAA P
Sbjct: 174 SASTDNLAASVTPTTVAASVASSVDTDSASATISSVVDSATSSVSTVIP--SSIISAAPP 231

Query: 587 TAGFLSTIACFMYLSIACS 531
            +   ST A   Y S   S
Sbjct: 232 DSASESTPASTSYASSTTS 250


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 223 FNSTPVHPRKCIHILTKILYLLNQGEE 303
           F   PV       I  KIL+LLN+G E
Sbjct: 281 FPQPPVESHSSFDIKQKILHLLNEGNE 307


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 193 LSRFWKTLLSSSFPSRRAFIML 128
           L +FW  LL+++FP ++A   L
Sbjct: 401 LHQFWNALLNTTFPDKKAMAPL 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,542,328
Number of Sequences: 5004
Number of extensions: 72188
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)