Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_G01
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   2.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.8  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   8.5  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   8.5  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 711 LGCCCWC 731
           + CCCWC
Sbjct: 9   MSCCCWC 15


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 105 NLEINNMPKNDKIRNTSVTK 46
           NLEI+  PK++ + N  V K
Sbjct: 469 NLEISTRPKSNTVENACVLK 488


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 117 LKEQSIMKARRD-GKEEDSNVFQNLDKTTLLQXGKIFQLY 233
           LKE  +   R+  GK+    V +  +KT  +  GKI+Q++
Sbjct: 130 LKEVMLEVLRQALGKQYTPEVAEAWNKTLDMMFGKIYQVF 169


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 117 LKEQSIMKARRD-GKEEDSNVFQNLDKTTLLQXGKIFQLY 233
           LKE  +   R+  GK+    V +  +KT  +  GKI+Q++
Sbjct: 130 LKEVMLEVLRQALGKQYTPEVAEAWNKTLDMMFGKIYQVF 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,334
Number of Sequences: 438
Number of extensions: 4647
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)