Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F22
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   3.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   6.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   8.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.5  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 295 LKRRNPNTPTITYDISQLFDFVDQLADLSCLVYQKSTNTY 414
           LKRRN        D  Q    +  +  +S  +Y++  N Y
Sbjct: 333 LKRRNIEIVAKNNDTLQFISGIKIIKQISSNIYERQNNEY 372


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 599 NFSKHNNFSLTVLCYTTMY 543
           N+S +NN +   LCY   Y
Sbjct: 90  NYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 599 NFSKHNNFSLTVLCYTTMY 543
           N+S +NN +   LCY   Y
Sbjct: 90  NYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 599 NFSKHNNFSLTVLCYTTMY 543
           N+S +NN +   LCY   Y
Sbjct: 90  NYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 599 NFSKHNNFSLTVLCYTTMY 543
           N+S +NN +   LCY   Y
Sbjct: 90  NYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 599 NFSKHNNFSLTVLCYTTMY 543
           N+S +NN +   LCY   Y
Sbjct: 90  NYSNYNNNNYKQLCYNINY 108


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 636 FISEVQHLALLFM*NHL 686
           F  EVQHLA  F+ N+L
Sbjct: 392 FPDEVQHLARRFLNNYL 408


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 628 NLIIKESYQRIFPNIIISLLLYYVIQLCIFSSLHCTVFLKL 506
           N+I+   Y RIFPN     +LY    + I  +L C + LKL
Sbjct: 132 NIIMPNVYIRIFPN---GSVLY---SIRISLTLSCPMNLKL 166


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 628 NLIIKESYQRIFPNIIISLLLYYVIQLCIFSSLHCTVFLKL 506
           N+I+   Y RIFPN     +LY    + I  +L C + LKL
Sbjct: 132 NIIMPNVYIRIFPN---GSVLY---SIRISLTLSCPMNLKL 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,887
Number of Sequences: 438
Number of extensions: 4998
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)