Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F20
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    32   0.52 
10_08_0965 + 21915842-21916906                                         29   4.9  
06_03_0824 + 25105450-25105482,25105649-25106485,25106580-251067...    29   6.5  
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    29   6.5  
03_02_0225 + 6565337-6565369,6565564-6565734,6566113-6566400,656...    29   6.5  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903     28   8.5  
01_01_0426 + 3234987-3235935,3236744-3236782,3237044-3237409,324...    28   8.5  

>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 520 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTWSVF 696
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P  +S++
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLY 341


>10_08_0965 + 21915842-21916906
          Length = 354

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 579 SQRWRNPTGL*RYQAFPPGSSLVRS-PVPTLPLTGYLV 689
           S R  NP       + PP  + VR+ P+PTLP + YLV
Sbjct: 193 SSRRSNPNSAAAVASAPPEGAAVRAYPLPTLPNSEYLV 230


>06_03_0824 +
           25105450-25105482,25105649-25106485,25106580-25106738,
           25106830-25106886,25106971-25107202,25107338-25107638,
           25107703-25107976,25108051-25108152,25108244-25108525
          Length = 758

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 523 WRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTWSVF 696
           WR  +        T  D Q    +    +KD    P + PSC L+F P   P  +S++
Sbjct: 622 WRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLY 679


>04_04_0491 -
           25605560-25605684,25605826-25605928,25606026-25607592,
           25608694-25610198
          Length = 1099

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 159 FSLHSSCGLSKLINVSYHVWIQLTLXKGRSAAAKSTNNLNLKGSL*XXGXGN 4
           ++++  CG+S+L N+     I+ T   G    A   N  NL+G L   G  N
Sbjct: 697 WNVYMPCGISELTNLQTMHTIKFTSDSGSCGIADLVNLDNLRGELCISGIEN 748


>03_02_0225 +
           6565337-6565369,6565564-6565734,6566113-6566400,
           6566495-6566653,6566745-6566801,6566886-6567117,
           6567253-6567553,6567618-6567891,6567966-6568067,
           6568159-6568440
          Length = 632

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = +1

Query: 523 WRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTWSVF 696
           WR  +        T  D Q    +    +KD    P + PSC L+F P   P  +S++
Sbjct: 496 WRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQPLHYSLY 553


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +3

Query: 300 NESAN---ARGEAVCVLGALPLPRSLTRCAR 383
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
          Length = 405

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 723 KQXHASRREKDGPGIR*AAGSEQESAR 643
           +Q H SRRE+DG G    +GS Q + R
Sbjct: 128 RQPHRSRRERDGNGSDGKSGSSQAANR 154


>01_01_0426 +
           3234987-3235935,3236744-3236782,3237044-3237409,
           3240871-3242315
          Length = 932

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/64 (28%), Positives = 24/64 (37%)
 Frame = -3

Query: 873 ISRX*PGGLKTIVPDKAQRXXLXRGFVHTAQLXRERPXHXXEIPTA*AMRKQXHASRREK 694
           ++R   G     +P    R  L  G    A L R         P+A +   + HA RRE 
Sbjct: 383 VARRRAGAAGVALPGACVRRRLDAGVAPAAALARPGAVIAGSTPSAGSRHHRDHAIRREP 442

Query: 693 DGPG 682
             PG
Sbjct: 443 PSPG 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,865,038
Number of Sequences: 37544
Number of extensions: 491356
Number of successful extensions: 1419
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1419
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)