Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_F19
(942 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 52 9e-08
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 48 2e-06
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 47 3e-06
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 47 4e-06
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 43 5e-05
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 37 0.004
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 36 0.006
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 35 0.014
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 33 0.077
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 32 0.13
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 30 0.54
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 30 0.54
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 28 1.7
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 28 2.2
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 26 6.7
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 52.4 bits (120), Expect = 9e-08
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 401 LSDSKGECVICLEELSXGDTIARLPCLCIYHKXCIDQWFEVNXSC 535
L D +GEC IC+E D + +LPC +H+ CI W VN +C
Sbjct: 389 LIDEEGECTICMEMFKINDDVIQLPCKHYFHENCIKPWLRVNGTC 433
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 48.0 bits (109), Expect = 2e-06
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 419 ECVICLEELSXGDTIARLP-CLCIYHKXCIDQWFEVNXS-CP 538
EC+IC EE + GD +AR+ CLCI+H C W + CP
Sbjct: 229 ECIICFEEFAAGDRVARIEYCLCIFHLKCYRDWLSTGAAGCP 270
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 47.2 bits (107), Expect = 3e-06
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 383 SYNEDVLSDSKGECVICLEELSXGDTIARL-PCLCIYHKXCIDQWFEV-NXSCP 538
+Y +D S C+ICLE + GD +L C +H+ CIDQW N SCP
Sbjct: 753 AYFDDASLSSADSCLICLETYTNGDICRKLQACKHFFHQACIDQWLTTGNNSCP 806
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 46.8 bits (106), Expect = 4e-06
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 419 ECVICLEELSXGDTIARLPCLCIYHKXCIDQWF-EVNXSCP 538
ECVICLE + GD + LPC +H+ CI +W + +CP
Sbjct: 320 ECVICLESFTKGDKVVALPCKHEFHRPCIAKWIVDYRHACP 360
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 43.2 bits (97), Expect = 5e-05
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 398 VLSDSKGECVICLEELSXGDTIARLPCLCIYHKXCIDQWF-EVNXSCP 538
+L D + C+IC + + D + LPC ++H CID W + SCP
Sbjct: 197 LLEDEEDFCIICYADYAFDDILRVLPCEHVFHTQCIDTWMTTMKASCP 244
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 37.1 bits (82), Expect = 0.004
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +2
Query: 404 SDSKGECVICLEELSXGDTIARLP-CLCIYHKXCIDQWF-EVNXSCP 538
S + C++CL D RL C +H+ CIDQW SCP
Sbjct: 519 SGTDERCLVCLSNFELNDECRRLKQCNHFFHRECIDQWLTSSQNSCP 565
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 36.3 bits (80), Expect = 0.006
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 422 CVICLEELSXGDT--IARLPCLCIYHKXCIDQWFEVNXSCP 538
C IC ++++ D ++PC I+ K C+ +W E + +CP
Sbjct: 107 CPICYDDMNENDEKQATKMPCGHIFGKNCLQKWLENHCTCP 147
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 35.1 bits (77), Expect = 0.014
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 419 ECVICLEELSXGDTIAR-LPCLCIYHKXCIDQWFEVNXS-CP 538
EC ICL E S + R LPC I+H CID + N CP
Sbjct: 497 ECTICLCEYSEESPLYRELPCHHIFHPACIDPYLLKNSDLCP 538
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 32.7 bits (71), Expect = 0.077
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 452 GDTIARLPCLCIYHKXCIDQWFEVNXSCP 538
G IA++PC +H C++ W V +CP
Sbjct: 48 GLRIAKIPCGHYFHNHCLESWCRVANTCP 76
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 31.9 bits (69), Expect = 0.13
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 473 PCLCIYHKXCIDQWFEVNXSCP 538
PC +YH+ C+ QW E CP
Sbjct: 646 PCHHLYHRQCLLQWMETRSICP 667
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 29.9 bits (64), Expect = 0.54
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 458 TIARLPCLCIYHKXCIDQWFEVNXSCP 538
T RLPC I H C+ W E +CP
Sbjct: 322 TPKRLPCGHILHFHCLRNWLERQQTCP 348
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 29.9 bits (64), Expect = 0.54
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 298 IKCPVCSKFVLPDDIECHLD 357
++CPVC+K V +DI HLD
Sbjct: 7 VQCPVCAKTVTMNDINPHLD 26
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +2
Query: 419 ECVICLEELSXGDTIARLPC-LC--IYHKXCIDQWFEVNXS--CP 538
EC IC LS T+ C C +H C+ +WF+ + S CP
Sbjct: 1557 ECAICYSVLSVERTLPNKRCGTCRHKFHASCLYKWFKSSNSSRCP 1601
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 386 YNEDVL-SDSKGECVICLEELSXGDTIARLPCLCIYHKXCIDQWFEVNXSCP 538
Y VL ++S C+IC + + G C +Y C++ W + + SCP
Sbjct: 1079 YEHIVLKAESHQICIICRDIIKQGFITT---CGHLYCSFCLEAWLKHSSSCP 1127
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 335 TT*SAISIXCLTRPRLSYNEDVLS 406
T+ S I LT PR S+NED+LS
Sbjct: 722 TSSSVHPIQTLTAPRQSFNEDLLS 745
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,056
Number of Sequences: 5004
Number of extensions: 35685
Number of successful extensions: 88
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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