Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F14
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    41   2e-04
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.7  

>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 23/101 (22%), Positives = 48/101 (47%)
 Frame = +2

Query: 371 LKDHEVNNMFLLKPGSLPNITVKHIIFISRPKLSLMDLVADYILSIRAKQTAPVEFHLFF 550
           L++H +  ++     ++PN   K  I++ RP      LVA ++   + +    +E  +  
Sbjct: 45  LQEHGIPQVYWFNE-NIPNDIEKKTIYLCRPTYENAKLVATHVRQFQ-RDMLRIESTVIV 102

Query: 551 VPRKSELCKVHLTNRGVVSNMTIEEFKCDIIPFESDVMSLE 673
           +P  + L +  L   GV   + + E+    +P + D++SLE
Sbjct: 103 LPTSNILFETVLQEEGVFGELLVTEWPLHAVPLDKDLLSLE 143



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 711 DTSCIYNAAQALRTIQQFYGIVPRVFGKGQAAKQVWDLLCRLXKEE 848
           + S +  +  AL   ++ +G  PRV G+G  A ++ +LL +  +EE
Sbjct: 150 EESLLQRSTDALIDFERTHGRFPRVSGRGPYAAKMLELLEKTYQEE 195


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 656 DVMSLETTK*LPRKLHRR*HKLHIQCCTGTKNHPTVLWNCASC 784
           D+  L+ T  +  +L  R ++  +  CT T N  T +W+C +C
Sbjct: 176 DLSKLDMTSRMIVELKNRLYECSV--CTDTINPSTSIWSCGTC 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,073
Number of Sequences: 5004
Number of extensions: 66499
Number of successful extensions: 160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)