Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP12_F_F14
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0622 - 8175226-8175312,8175674-8175763,8176370-8176457,817...    49   6e-06
02_02_0343 + 9163976-9165220                                           28   8.5  

>04_01_0622 -
           8175226-8175312,8175674-8175763,8176370-8176457,
           8177021-8177095,8177754-8177821,8177898-8177955,
           8178862-8178942,8179968-8180038,8180144-8180225,
           8182327-8182449,8183023-8183129,8183201-8183263,
           8183877-8183936,8184100-8184151,8185566-8185598,
           8185820-8185871,8185965-8186028,8186693-8186749,
           8186962-8187006,8187083-8187190,8188147-8188212,
           8188382-8188492,8190841-8191035,8191419-8191499,
           8191591-8191630,8191764-8191816
          Length = 669

 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 34/112 (30%), Positives = 55/112 (49%)
 Frame = +2

Query: 338 GL*ALXAQYSFLKDHEVNNMFLLKPGSLPNITVKHIIFISRPKLSLMDLVADYILSIRAK 517
           G  +L  Q S LK++    + LL    L     K I+++ R +L  M L+A  I +   K
Sbjct: 46  GTLSLILQTSLLKEYGAE-LRLLSAEPLQTECAK-ILYLVRSELKFMKLIASQIKNDEPK 103

Query: 518 QTAPVEFHLFFVPRKSELCKVHLTNRGVVSNMTIEEFKCDIIPFESDVMSLE 673
                EF L+FVPR++  C+  L    V   +T+ E+   ++P + DV+  E
Sbjct: 104 GLQR-EFFLYFVPRRTVACEKILEEEKVHQKLTLGEYPLYLVPLDEDVICFE 154



 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 20/61 (32%), Positives = 39/61 (63%)
 Frame = +3

Query: 672 KLQNDFRENYIEGDTSCIYNAAQALRTIQQFYGIVPRVFGKGQAAKQVWDLLCRLXKEEQ 851
           +L +  +E  IEGDTS +++ A+A+  ++  +G++P V  KG A+ +  +LL  + +E+ 
Sbjct: 154 ELDHSLQECLIEGDTSSVWHVAKAIHKLEFAFGVIPNVRAKGVASTKAAELLNSMQQEDP 213

Query: 852 V 854
           V
Sbjct: 214 V 214



 Score = 33.5 bits (73), Expect = 0.23
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 217 HLAGGRLNVALLQETMRTELLNLLQQYSGPKVTIWDDWLAGPVGL 351
           +L    LN+A L+E  + +LLN+L+   G K  + D  LAG + L
Sbjct: 6   NLDNAPLNLAALREQSQKDLLNILKSIRGKKCVVIDPKLAGTLSL 50


>02_02_0343 + 9163976-9165220
          Length = 414

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 525 LQ*NFTCSLCHAKVNCAK-YISPIEEWSVT*QLKSL 629
           LQ   TCSLCH  ++ +K  + P+E+     +L SL
Sbjct: 130 LQAPITCSLCHMSISSSKNLVLPVEDGGGLQELSSL 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,882,223
Number of Sequences: 37544
Number of extensions: 389040
Number of successful extensions: 773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)