Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP12_F_F14
(876 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016617-1|AAH16617.1| 596|Homo sapiens vacuolar protein sortin... 103 1e-21
AF439857-1|AAL33577.1| 596|Homo sapiens vacuolar sorting protei... 103 1e-21
AK026840-1|BAB15570.1| 443|Homo sapiens protein ( Homo sapiens ... 64 8e-10
BC016445-1|AAH16445.1| 617|Homo sapiens vacuolar protein sortin... 46 2e-04
AL357472-1|CAB93109.1| 528|Homo sapiens VPS33B protein. 46 2e-04
AK027754-1|BAB55345.1| 617|Homo sapiens protein ( Homo sapiens ... 46 2e-04
AF308803-1|AAG34680.1| 617|Homo sapiens vacuolar protein sortin... 46 2e-04
AF201694-1|AAF91174.1| 617|Homo sapiens vacuolar protein sortin... 46 2e-04
>BC016617-1|AAH16617.1| 596|Homo sapiens vacuolar protein sorting
33 homolog A (S. cerevisiae) protein.
Length = 596
Score = 103 bits (246), Expect = 1e-21
Identities = 52/110 (47%), Positives = 75/110 (68%), Gaps = 1/110 (0%)
Frame = +2
Query: 350 LXAQYSFLKDHEVNNMFLLKPGSLPNITVKHIIFISRPKLSLMDLVADYILSIRAKQTAP 529
L AQYS LK+HEV MF LK LP VK+IIF RP+L LMD++A+ +LS ++
Sbjct: 48 LIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLS-EDRRGPT 106
Query: 530 VEFHLFFVPRKSELCKVHLTNRGVV-SNMTIEEFKCDIIPFESDVMSLET 676
+FH+ FVPR+S LC+ L + GV+ S + EE+ D+IPF+ D++S+E+
Sbjct: 107 RDFHILFVPRRSLLCEQRLKDLGVLGSFIHREEYSLDLIPFDGDLLSMES 156
Score = 64.9 bits (151), Expect = 4e-10
Identities = 28/74 (37%), Positives = 50/74 (67%)
Frame = +3
Query: 624 SLSVTSFHSKVMSCL*KLQNDFRENYIEGDTSCIYNAAQALRTIQQFYGIVPRVFGKGQA 803
SL + F ++S + + F+E Y+EGD + +Y+AA+ L T+Q YG +P++FGKG+
Sbjct: 141 SLDLIPFDGDLLSM--ESEGAFKECYLEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGEC 198
Query: 804 AKQVWDLLCRLXKE 845
A+QV +++ R+ +E
Sbjct: 199 ARQVANMMIRMKRE 212
Score = 52.4 bits (120), Expect = 2e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +1
Query: 208 MSSHLAGGRLNVALLQETMRTELLNLLQQYSGPKVTIWDDWLAGPVGL 351
M++HL+ GR+N+ +L+E +R EL L + +G K +WD++L GP GL
Sbjct: 1 MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGL 48
>AF439857-1|AAL33577.1| 596|Homo sapiens vacuolar sorting protein
33A protein.
Length = 596
Score = 103 bits (246), Expect = 1e-21
Identities = 52/110 (47%), Positives = 75/110 (68%), Gaps = 1/110 (0%)
Frame = +2
Query: 350 LXAQYSFLKDHEVNNMFLLKPGSLPNITVKHIIFISRPKLSLMDLVADYILSIRAKQTAP 529
L AQYS LK+HEV MF LK LP VK+IIF RP+L LMD++A+ +LS ++
Sbjct: 48 LIAQYSLLKEHEVEKMFTLKGNRLPAADVKNIIFFVRPRLELMDIIAENVLS-EDRRGPT 106
Query: 530 VEFHLFFVPRKSELCKVHLTNRGVV-SNMTIEEFKCDIIPFESDVMSLET 676
+FH+ FVPR+S LC+ L + GV+ S + EE+ D+IPF+ D++S+E+
Sbjct: 107 RDFHILFVPRRSLLCEQRLKDLGVLGSFIHREEYSLDLIPFDGDLLSMES 156
Score = 64.9 bits (151), Expect = 4e-10
Identities = 28/74 (37%), Positives = 50/74 (67%)
Frame = +3
Query: 624 SLSVTSFHSKVMSCL*KLQNDFRENYIEGDTSCIYNAAQALRTIQQFYGIVPRVFGKGQA 803
SL + F ++S + + F+E Y+EGD + +Y+AA+ L T+Q YG +P++FGKG+
Sbjct: 141 SLDLIPFDGDLLSM--ESEGAFKECYLEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGEC 198
Query: 804 AKQVWDLLCRLXKE 845
A+QV +++ R+ +E
Sbjct: 199 ARQVANMMIRMKRE 212
Score = 52.4 bits (120), Expect = 2e-06
Identities = 21/48 (43%), Positives = 34/48 (70%)
Frame = +1
Query: 208 MSSHLAGGRLNVALLQETMRTELLNLLQQYSGPKVTIWDDWLAGPVGL 351
M++HL+ GR+N+ +L+E +R EL L + +G K +WD++L GP GL
Sbjct: 1 MAAHLSYGRVNLNVLREAVRRELREFLDKCAGSKAIVWDEYLTGPFGL 48
>AK026840-1|BAB15570.1| 443|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23187 fis, clone LNG11989. ).
Length = 443
Score = 63.7 bits (148), Expect = 8e-10
Identities = 24/53 (45%), Positives = 41/53 (77%)
Frame = +3
Query: 687 FRENYIEGDTSCIYNAAQALRTIQQFYGIVPRVFGKGQAAKQVWDLLCRLXKE 845
F+E Y+EGD + +Y+AA+ L T+Q YG +P++FGKG+ A+QV +++ R+ +E
Sbjct: 7 FKECYLEGDQTSLYHAAKGLMTLQALYGTIPQIFGKGECARQVANMMIRMKRE 59
>BC016445-1|AAH16445.1| 617|Homo sapiens vacuolar protein sorting
33 homolog B (yeast) protein.
Length = 617
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +3
Query: 672 KLQNDFRENYIEGDTSCIYNAAQALRTIQQFYGIVPRVFGKGQAAKQVWDLLCRLXKEE 848
+L FR+ ++EGD I AQAL + YG P +G G+ AK ++L L +EE
Sbjct: 156 ELPEFFRDYFLEGDQRWINTVAQALHLLSTLYGPFPNCYGIGRCAKMAYELWRNLEEEE 214
>AL357472-1|CAB93109.1| 528|Homo sapiens VPS33B protein.
Length = 528
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +3
Query: 672 KLQNDFRENYIEGDTSCIYNAAQALRTIQQFYGIVPRVFGKGQAAKQVWDLLCRLXKEE 848
+L FR+ ++EGD I AQAL + YG P +G G+ AK ++L L +EE
Sbjct: 67 ELPEFFRDYFLEGDQRWINTVAQALHLLSTLYGPFPNCYGIGRCAKMAYELWRNLEEEE 125
>AK027754-1|BAB55345.1| 617|Homo sapiens protein ( Homo sapiens
cDNA FLJ14848 fis, clone PLACE1000492, highly similar to
Rat vacuolar protein sorting homolog r-vps33b mRNA. ).
Length = 617
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +3
Query: 672 KLQNDFRENYIEGDTSCIYNAAQALRTIQQFYGIVPRVFGKGQAAKQVWDLLCRLXKEE 848
+L FR+ ++EGD I AQAL + YG P +G G+ AK ++L L +EE
Sbjct: 156 ELPEFFRDYFLEGDQRWINTVAQALHLLSTLYGPFPNCYGIGRCAKMAYELWRNLEEEE 214
>AF308803-1|AAG34680.1| 617|Homo sapiens vacuolar protein sorting
protein 33B protein.
Length = 617
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +3
Query: 672 KLQNDFRENYIEGDTSCIYNAAQALRTIQQFYGIVPRVFGKGQAAKQVWDLLCRLXKEE 848
+L FR+ ++EGD I AQAL + YG P +G G+ AK ++L L +EE
Sbjct: 156 ELPEFFRDYFLEGDQRWINTVAQALHLLSTLYGPFPNCYGIGRCAKMAYELWRNLEEEE 214
>AF201694-1|AAF91174.1| 617|Homo sapiens vacuolar protein sorting
33B protein.
Length = 617
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/59 (37%), Positives = 32/59 (54%)
Frame = +3
Query: 672 KLQNDFRENYIEGDTSCIYNAAQALRTIQQFYGIVPRVFGKGQAAKQVWDLLCRLXKEE 848
+L FR+ ++EGD I AQAL + YG P +G G+ AK ++L L +EE
Sbjct: 156 ELPEFFRDYFLEGDQRWINTVAQALHLLSTLYGPFPNCYGIGRCAKMAYELWRNLEEEE 214
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,755,946
Number of Sequences: 237096
Number of extensions: 2408440
Number of successful extensions: 3977
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3973
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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